View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7979_low_3 (Length: 373)

Name: NF7979_low_3
Description: NF7979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7979_low_3
NF7979_low_3
[»] chr7 (9 HSPs)
chr7 (110-356)||(4302973-4303219)
chr7 (110-232)||(11001101-11001223)
chr7 (122-207)||(1369529-1369614)
chr7 (110-210)||(8915448-8915547)
chr7 (110-230)||(1217487-1217605)
chr7 (113-176)||(1786420-1786483)
chr7 (110-232)||(13883010-13883133)
chr7 (113-210)||(11228432-11228528)
chr7 (116-229)||(27142353-27142462)
[»] chr2 (12 HSPs)
chr2 (110-325)||(31635882-31636097)
chr2 (110-356)||(35681774-35682016)
chr2 (115-206)||(280294-280385)
chr2 (110-179)||(27952652-27952721)
chr2 (110-232)||(33053109-33053230)
chr2 (112-172)||(2165624-2165684)
chr2 (111-232)||(32162243-32162363)
chr2 (110-209)||(22011095-22011194)
chr2 (111-168)||(23457389-23457446)
chr2 (134-210)||(18945663-18945739)
chr2 (317-356)||(31635659-31635698)
chr2 (110-210)||(36648585-36648685)
[»] chr8 (7 HSPs)
chr8 (165-345)||(37192882-37193063)
chr8 (110-207)||(23573249-23573346)
chr8 (110-238)||(2688855-2688981)
chr8 (110-172)||(22922177-22922239)
chr8 (112-183)||(22512377-22512448)
chr8 (110-168)||(26377776-26377834)
chr8 (116-210)||(24577811-24577905)
[»] chr1 (8 HSPs)
chr1 (113-210)||(10926906-10927003)
chr1 (118-232)||(13441924-13442036)
chr1 (110-232)||(23988913-23989035)
chr1 (113-178)||(8966030-8966095)
chr1 (110-210)||(10927814-10927914)
chr1 (113-208)||(40805571-40805666)
chr1 (125-210)||(31915247-31915332)
chr1 (110-178)||(31522576-31522644)
[»] chr6 (14 HSPs)
chr6 (110-231)||(18203126-18203246)
chr6 (110-233)||(22873499-22873622)
chr6 (110-210)||(34374062-34374162)
chr6 (110-210)||(22888965-22889065)
chr6 (110-230)||(12881715-12881834)
chr6 (110-210)||(22910508-22910608)
chr6 (110-172)||(3541947-3542009)
chr6 (110-172)||(30049617-30049679)
chr6 (110-172)||(30051904-30051966)
chr6 (110-210)||(12778684-12778782)
chr6 (121-171)||(18720019-18720069)
chr6 (110-170)||(32361109-32361169)
chr6 (118-173)||(8047663-8047718)
chr6 (112-140)||(11194398-11194426)
[»] chr5 (3 HSPs)
chr5 (118-232)||(21845225-21845335)
chr5 (110-231)||(18252109-18252230)
chr5 (117-172)||(19677629-19677684)
[»] chr4 (7 HSPs)
chr4 (118-210)||(22716324-22716416)
chr4 (118-210)||(22988801-22988893)
chr4 (110-206)||(6659656-6659751)
chr4 (110-210)||(10494634-10494734)
chr4 (112-210)||(7635000-7635098)
chr4 (110-172)||(13085421-13085483)
chr4 (118-188)||(9260297-9260367)
[»] scaffold0054 (3 HSPs)
scaffold0054 (112-232)||(49002-49122)
scaffold0054 (110-210)||(10361-10461)
scaffold0054 (112-232)||(37404-37523)
[»] chr3 (5 HSPs)
chr3 (111-232)||(365879-365999)
chr3 (110-232)||(8536658-8536780)
chr3 (110-160)||(3064066-3064116)
chr3 (126-208)||(2473000-2473084)
chr3 (113-158)||(24516698-24516743)
[»] scaffold0110 (1 HSPs)
scaffold0110 (110-172)||(45943-46005)
[»] scaffold0024 (2 HSPs)
scaffold0024 (110-210)||(145444-145544)
scaffold0024 (110-210)||(144179-144282)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 110 - 356
Target Start/End: Complemental strand, 4303219 - 4302973
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303219 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 4303120  T
Q  210 gcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatagcagaatcacttgata 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303119 gcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatagcagaatcacttgata 4303020  T
Q  310 attctatataagttagagcactgttaagtgatgcctaatcattttgt 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  4303019 attctatataagttagagcactgttaagtgatgcctaatcattttgt 4302973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 11001101 - 11001223
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    ||||||||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||  |||||||||||||| ||||    
T  11001101 ccctcctacatcagtctcctccacctctgaagaactcgaccccaaattctcattgtgataaagagcttcccatgcatgttaactcctccaatgaaaaaga 11001200  T
Q  210 gcacacccacccggatcccattg 232  Q
    |  || || || |||||||||||    
T  11001201 gatcatcctcctggatcccattg 11001223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 1369614 - 1369529
Alignment:
Q  122 agtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaa 207  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  1369614 agtctcctccacctctgaagaactcgagcccgagttcttattctgataaagagcttcccatgaatgttgactcctccaatgaacaa 1369529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 8915448 - 8915547
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    ||||||||||||||||||||||| |||||||||||| || ||||| |||||||| | ||||| ||| |||||||||||| ||||||||| ||||||||||    
T  8915448 ccctcctacatcagtctcctccatctctgaagaactagaccccgaattctcattctaataaaaagc-tcccatgcatgttgactcctccgatgaacaaga 8915546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 1217487 - 1217605
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||||| | ||||||||||||| ||  |||||||||||  ||||||||| |||||||    
T  1217487 ccctcctgcatcagtctcctccacctttgaagaactcga-cccgagttcacgttttgataaagagatt-tcatgcatgtcgtgtcctccaattaacaaga 1217584  T
Q  210 gcacacccacccggatcccat 230  Q
    |  ||||| || |||||||||    
T  1217585 gaccaccctcctggatcccat 1217605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 1786483 - 1786420
Alignment:
Q  113 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagct 176  Q
    |||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  1786483 tcctacatgagtctcctccacctctgaagaactcgacctcgagttctcattttgataaagagct 1786420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 13883010 - 13883133
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgc--atgtcgactcctccaatgaacaa 207  Q
    ||||||| |||||||||| ||||||||| |||||||||| |||||||||||||| | |||||||| ||| |||||  |||| | |||||||||| |||||    
T  13883010 ccctcctgcatcagtctcgtccacctctaaagaactcga-cccgagttctcattctaataaagagattctcatgcatatgttggctcctccaataaacaa 13883108  T
Q  208 gagcacacccacccggatcccattg 232  Q
    |||  ||||| || |||||||||||    
T  13883109 gagaccaccctcctggatcccattg 13883133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 11228528 - 11228432
Alignment:
Q  113 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 210  Q
    |||||||||||||| |||| ||||| ||||||| |  |||||||||||||| | ||||||| |||||||||||||  |||||||  ||||||||||||    
T  11228528 tcctacatcagtcttctcc-cctcttaagaacttgcccccgagttctcattctaataaagaacttcccatgcatgatgactcctataatgaacaagag 11228432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 27142462 - 27142353
Alignment:
Q  116 tacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaa-gagcttcccatgcatgtcgactcctccaatgaacaagagcaca 214  Q
    ||||||||||||||| ||    |||||| |||| ||| |||||| ||| ||||||| |||||||| |||||||| | ||| |||||||||||  || |||    
T  27142462 tacatcagtctcctctac----gaagaaatcgaccccaagttcttattatgataaaagagcttcc-atgcatgttggctcttccaatgaacagaagaaca 27142368  T
Q  215 cccacccggatccca 229  Q
    |||||||| ||||||    
T  27142367 cccacccgaatccca 27142353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 110 - 325
Target Start/End: Complemental strand, 31636097 - 31635882
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||    
T  31636097 ccctcctacatcagtctcctccacctctgaagaactcgaatccgagttctcatttagataaagagtttcccatgcatgttgactcctccaatgaacaaga 31635998  T
Q  210 gcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatagcagaatcacttgata 309  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||    
T  31635997 gcacacccacccggatcccattggttgaactctgaaggtccgtttttatggacagagcagccactgtgcaatgtaccaacaatagcagactcacttgata 31635898  T
Q  310 attctatataagttag 325  Q
    ||||||||||||||||    
T  31635897 attctatataagttag 31635882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 110 - 356
Target Start/End: Complemental strand, 35682016 - 35681774
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| ||||||| || ||||||||||||| | |||||||| ||||||| ||||||||||||    
T  35682016 ccctcctgcatcagtctcctccacctctgaagaactcgaccccaagttctctttctgataaagagctttctatgcatgttgactccttcaatgaacaaga 35681917  T
Q  210 gcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatagcagaatcacttgata 309  Q
    |     ||||| |||||||||||||||||  ||||  |||| |||||||||||| ||| | ||||| |||| ||||||||||||||||| ||||||||||    
T  35681916 g----accacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcaaggtaccaacaatagcagactcacttgata 35681821  T
Q  310 attctatataagttagagcactgttaagtgatgcctaatcattttgt 356  Q
    ||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  35681820 attctgtataagttagagtactgttaagtgatgcctgatcattttgt 35681774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 280294 - 280385
Alignment:
Q  115 ctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaaca 206  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| || ||||||||||||||    
T  280294 ctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcacatgcatgttgaatcctccaatgaaca 280385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 27952652 - 27952721
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcc 179  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  27952652 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcc 27952721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 110 - 232
Target Start/End: Complemental strand, 33053230 - 33053109
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    |||| |||||||||||||||||||||||||||||||||| |||| ||||| ||| | |||||||||||| ||| |||||||||||||| ||| |||||||    
T  33053230 cccttctacatcagtctcctccacctctgaagaactcgaccccg-gttcttattctaataaagagcttctcattcatgtcgactcctctaataaacaaga 33053132  T
Q  210 gcacacccacccggatcccattg 232  Q
    |  ||||| || | |||||||||    
T  33053131 gaccaccctcctgaatcccattg 33053109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 2165684 - 2165624
Alignment:
Q  112 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 172  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  2165684 ctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 2165624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 111 - 232
Target Start/End: Original strand, 32162243 - 32162363
Alignment:
Q  111 cctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 210  Q
    |||| ||||| ||||||||||| ||||||| ||||| | |  ||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||    
T  32162243 cctcttacattagtctcctccatctctgaaaaactcaaccttgagttctcattctgataaagagcttcccatgcatgttgact-ctctaatgaacaagag 32162341  T
Q  211 cacacccacccggatcccattg 232  Q
      ||||| ||  ||||||||||    
T  32162342 accaccctccttgatcccattg 32162363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 110 - 209
Target Start/End: Complemental strand, 22011194 - 22011095
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    ||||||| ||||| |||||||||||||| |||||||||| || ||||||||||| | |||||||  ||| |||| |||| ||||||| | ||||||||||    
T  22011194 ccctcctgcatcactctcctccacctctaaagaactcgaccctgagttctcattctaataaagaatttctcatgtatgttgactccttcgatgaacaaga 22011095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 23457446 - 23457389
Alignment:
Q  111 cctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat 168  Q
    ||||||||||||||| ||||||||||||||||||||   |||||||||||||| ||||    
T  23457446 cctcctacatcagtcgcctccacctctgaagaactctgacccgagttctcattctgat 23457389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 18945739 - 18945663
Alignment:
Q  134 ctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 210  Q
    ||||||| ||||||||||||| |||||||| |||| ||||| ||| ||| |||||  |||||| |||||||||||||    
T  18945739 ctctgaaaaactcgatcccgaattctcattctgattaagagtttctcattcatgttaactcctgcaatgaacaagag 18945663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 356
Target Start/End: Complemental strand, 31635698 - 31635659
Alignment:
Q  317 ataagttagagcactgttaagtgatgcctaatcattttgt 356  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  31635698 ataagttagagcaccgttaagtgatgcctgatcattttgt 31635659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 36648685 - 36648585
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat-aaagagcttcccatgcatgtcgactcctccaatgaacaag 208  Q
    ||||||||||| ||||||||||| || ||||||||||||  || ||||||  || |||| |||| |||| |||||||||  ||||| ||||||||| |||    
T  36648685 ccctcctacatgagtctcctccatctatgaagaactcgactcccagttcttgttctgataaaagtgctt-ccatgcatgatgactcttccaatgaataag 36648587  T
Q  209 ag 210  Q
    ||    
T  36648586 ag 36648585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 165 - 345
Target Start/End: Complemental strand, 37193063 - 37192882
Alignment:
Q  165 tgataaagagcttcccatgcatgtcgactcctccaatgaa-caagagcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggaca 263  Q
    |||| |||||||  |||||||||| |||||||||||  || |||||| ||| || || |||||||||||  |||||||||| ||||| ||||||||||||    
T  37193063 tgatgaagagctctccatgcatgttgactcctccaaaaaaacaagagaacatcctcctggatcccattgagtgaactgtgagggtccctttttatggaca 37192964  T
Q  264 gagctgtcactgtgcaatgtaccaacaatagcagaatcacttgataattctatataagttagagcactgttaagtgatgcct 345  Q
     ||| | ||||| |||||||||||||||| |||||  ||||||||||||||||| ||| ||||||| |||||||||||||||    
T  37192963 aagcagccactgagcaatgtaccaacaattgcagacgcacttgataattctatacaagctagagcattgttaagtgatgcct 37192882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 110 - 207
Target Start/End: Complemental strand, 23573346 - 23573249
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaa 207  Q
    |||| |||||| ||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23573346 cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagcttcccatgcatgttgactcctccaatgaacaa 23573249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 238
Target Start/End: Complemental strand, 2688981 - 2688855
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    ||||||||||| |||||||||||||| |||||||||||||| |||||||||||| | ||  |||| ||||||||||||| ||||||||||||||||| ||    
T  2688981 ccctcctacatgagtctcctccacctatgaagaactcgatcacgagttctcattctaat--agagtttcccatgcatgttgactcctccaatgaacatga 2688884  T
Q  210 gcacacccacccggatcccattggttgaa 238  Q
    |  ||||| |  |||||||||||| ||||    
T  2688883 gatcaccctcatggatcccattgggtgaa 2688855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 22922177 - 22922239
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 172  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  22922177 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttcataaag 22922239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 22512377 - 22512448
Alignment:
Q  112 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatg 183  Q
    ||||| |||||||||||||||||||| |||||||||| |||||||||| ||| ||||||  |||||||||||    
T  22512377 ctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattctgataagaagcttcccatg 22512448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 26377834 - 26377776
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat 168  Q
    |||||||||||||||||||||||||| |||||||||||| ||| |||||||||| ||||    
T  26377834 ccctcctacatcagtctcctccacctttgaagaactcgaccccaagttctcattctgat 26377776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 24577811 - 24577905
Alignment:
Q  116 tacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 210  Q
    |||||||||||||||||| ||||||||| |||| |  |||||||| || ||||| ||| |||| | ||||| |  ||||||||||| ||||||||    
T  24577811 tacatcagtctcctccacttctgaagaattcgaccttgagttctccttctgatacagaacttcgcttgcatatttactcctccaataaacaagag 24577905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 10927003 - 10926906
Alignment:
Q  113 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 210  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| |||||    
T  10927003 tcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagaacttcccatgcatgttgactcctccaatgaataagag 10926906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 118 - 232
Target Start/End: Original strand, 13441924 - 13442036
Alignment:
Q  118 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagagcacaccc 217  Q
    |||||||||||||||||||||||||| ||||||   |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||  || ||    
T  13441924 catcagtctcctccacctctgaagaattcgatca--agttctcattctgataaagagcttcccatgcatgttgactcctccaatgagcaagagatcatcc 13442021  T
Q  218 acccggatcccattg 232  Q
     || |||||||||||    
T  13442022 tcctggatcccattg 13442036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 232
Target Start/End: Complemental strand, 23989035 - 23988913
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    ||||||||||| |||||||| |||||||||||||||||| |  |||||||| ||||| ||||||||||||| |||||||  |||||| |||||| |||||    
T  23989035 ccctcctacattagtctcctacacctctgaagaactcgaccttgagttctcgttttggtaaagagcttcccttgcatgttaactccttcaatgagcaaga 23988936  T
Q  210 gcacacccacccggatcccattg 232  Q
    |  |||||  | |||||||||||    
T  23988935 gatcacccttctggatcccattg 23988913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 8966030 - 8966095
Alignment:
Q  113 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttc 178  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||    
T  8966030 tcctacatcagtctcctccacctctgaagaactcgaccctgagttctcattctgataaagagcttc 8966095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 10927914 - 10927814
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    |||||||||| ||||||||||||| |||||||||||||| |||||||||||||| | |||||||| ||| |||||| || ||||| | |||| |||||||    
T  10927914 ccctcctacaacagtctcctccacttctgaagaactcgaccccgagttctcattctaataaagagtttctcatgcaagttgactcttacaataaacaaga 10927815  T
Q  210 g 210  Q
    |    
T  10927814 g 10927814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 40805666 - 40805571
Alignment:
Q  113 tcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaag 208  Q
    ||||||||||||||||||||||| | ||||| |||| ||||||||||  || |||||| ||| ||| ||||||||  ||||||||| |||||||||    
T  40805666 tcctacatcagtctcctccacctttaaagaagtcgaccccgagttcttgttctgataaggagtttcacatgcatgatgactcctccgatgaacaag 40805571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 31915332 - 31915247
Alignment:
Q  125 ctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgca-tgtcgactcctccaatgaacaagag 210  Q
    |||||||||||||||||||||| | ||||||||||| || | || ||||| || |||| || ||| |||||||||||||||||||||    
T  31915332 ctcctccacctctgaagaactcaaccccgagttctcgttctaat-aagagttttccattcattgttgactcctccaatgaacaagag 31915247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 31522644 - 31522576
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttc 178  Q
    |||||||||||||| | | ||||||||||||||||||||   ||||||||| || |||||| |||||||    
T  31522644 ccctcctacatcagccccttccacctctgaagaactcgacttcgagttctcgttctgataatgagcttc 31522576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 18203246 - 18203126
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |||||||||| |||||||| |||||||||||    
T  18203246 ccctcctacatcagtctcctccacctctgaagaactcga-cccgagttctcattttaataaagagttttccatgcatgttgactcctcgaatgaacaaga 18203148  T
Q  210 gcacacccacccggatcccatt 231  Q
    |  ||||| ||  |||||||||    
T  18203147 gaccaccctcctagatcccatt 18203126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 22873622 - 22873499
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    |||||||||||||||||| ||||||||| | ||| |||||||| |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||    
T  22873622 ccctcctacatcagtctcatccacctctaaggaaatcgatcccaagttctcattatgataaagagcttcccatgcatattgactcctccaatgaacaaga 22873523  T
Q  210 gcacacccacccggatcccattgg 233  Q
    |   |||| || ||||||||||||    
T  22873522 gacaaccctcctggatcccattgg 22873499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 34374062 - 34374162
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    ||||| ||||| |||||||||||| |||||||||||| | ||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||    
T  34374062 ccctcttacattagtctcctccacatctgaagaactccaccccgagttctcattttgataaagagattcccatgcatgttgactcttccaatgaacaaga 34374161  T
Q  210 g 210  Q
    |    
T  34374162 g 34374162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 22889065 - 22888965
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    |||||||||||||||||| ||||||||| | ||| | || ||| |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||    
T  22889065 ccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgcatattgactcctccaatgaacaaga 22888966  T
Q  210 g 210  Q
    |    
T  22888965 g 22888965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 12881834 - 12881715
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||| |||||||  ||| |||| |||||||||||||| |||| || ||||||||||||    
T  12881834 ccctcctacatcagtctcctccacctaagaagaactcgaccccgagctctcattccgat-aagaacttcccatgcatgttgacttcttcaatgaacaaga 12881736  T
Q  210 gcacacccacccggatcccat 230  Q
    |  ||||| || |||||||||    
T  12881735 gaccaccctcctggatcccat 12881715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 22910608 - 22910508
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    |||||||||||||||||| ||||||||| | ||| | || ||| |||||||||| ||||||||||||||||||| || | ||||||||||||||||||||    
T  22910608 ccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgtatattgactcctccaatgaacaaga 22910509  T
Q  210 g 210  Q
    |    
T  22910508 g 22910508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 3542009 - 3541947
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 172  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  3542009 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 3541947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 30049679 - 30049617
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 172  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  30049679 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 30049617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 30051966 - 30051904
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 172  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  30051966 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 30051904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 12778684 - 12778782
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    ||||| |||||||||||||||||||||||||||||| || ||| | |||||||| ||||  |||| ||||  ||||||| ||||||||||||||||||||    
T  12778684 ccctcttacatcagtctcctccacctctgaagaacttgaccccaaattctcattctgat--agagtttcctttgcatgttgactcctccaatgaacaaga 12778781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 18720069 - 18720019
Alignment:
Q  121 cagtctcctccacctctgaagaactcgatcccgagttctcattttgataaa 171  Q
    ||||||||||||||| |||||||||||| ||||| |||| |||||||||||    
T  18720069 cagtctcctccacctttgaagaactcgaccccgaattctaattttgataaa 18720019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 32361169 - 32361109
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataa 170  Q
    ||||||||||| ||||| |||||||||| || ||||||| | |||||||||||| ||||||    
T  32361169 ccctcctacattagtcttctccacctctaaaaaactcgacctcgagttctcattatgataa 32361109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 8047663 - 8047718
Alignment:
Q  118 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaaga 173  Q
    |||| ||||||||||||||||||||||| || |||||||||| ||| | |||||||    
T  8047663 catcggtctcctccacctctgaagaacttgaccccgagttctaattctaataaaga 8047718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 140
Target Start/End: Complemental strand, 11194426 - 11194398
Alignment:
Q  112 ctcctacatcagtctcctccacctctgaa 140  Q
    |||||||||||||||||||||||||||||    
T  11194426 ctcctacatcagtctcctccacctctgaa 11194398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 118 - 232
Target Start/End: Original strand, 21845225 - 21845335
Alignment:
Q  118 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagagcacaccc 217  Q
    |||||||||  |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    | ||    
T  21845225 catcagtctgttccacctctgaagaactcgaccccgagttctcattctgataaagagcttcccatgcatgttgactcctccaatgaacaaga----aacc 21845320  T
Q  218 acccggatcccattg 232  Q
    |||||||||||||||    
T  21845321 acccggatcccattg 21845335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 18252230 - 18252109
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    ||||||| |||||| |||||| |||||||||||||| || |||||||||||||| ||||||| ||||| |||||||||| ||||||||||||| ||||||    
T  18252230 ccctcctgcatcagcctcctctacctctgaagaacttgaccccgagttctcattatgataaacagctttccatgcatgtggactcctccaatggacaaga 18252131  T
Q  210 gcacacccacccggatcccatt 231  Q
    |  ||||| || | ||||||||    
T  18252130 gaccaccctcctgaatcccatt 18252109  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 19677629 - 19677684
Alignment:
Q  117 acatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 172  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  19677629 acatcagtctcctccacctctgaagaactcgaccccgagttctcatctttataaag 19677684  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 118 - 210
Target Start/End: Complemental strand, 22716416 - 22716324
Alignment:
Q  118 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 210  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  22716416 catcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgactcctccaatgaacaagag 22716324  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 22988801 - 22988893
Alignment:
Q  118 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 210  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  22988801 catcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgactcctccaatgaacaagag 22988893  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 110 - 206
Target Start/End: Original strand, 6659656 - 6659751
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaaca 206  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| | ||||||| |||||||||||||||||||| || | ||||||||||| |||||    
T  6659656 ccctcctacatcagtctcctctacctctgaagaactcga-cccaaattctcatcttgataaagagcttcccatgaatattgactcctccaaagaaca 6659751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 10494734 - 10494634
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    ||||| ||||||||||| ||| || |||||||||||||| | | |||||| ||  ||||||| |||||||||||||||||||||||||||||||||||||    
T  10494734 ccctcatacatcagtcttctctacttctgaagaactcgacctcaagttctgatcctgataaatagcttcccatgcatgtcgactcctccaatgaacaaga 10494635  T
Q  210 g 210  Q
    |    
T  10494634 g 10494634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 112 - 210
Target Start/End: Complemental strand, 7635098 - 7635000
Alignment:
Q  112 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 210  Q
    |||| |||||||||||||||| ||||||||||||||| ||| | |||||||| | ||||| |||| ||||||||||| ||||||||| |||||||||||    
T  7635098 ctcccacatcagtctcctccatctctgaagaactcgaccccaaattctcattctaataaaaagctccccatgcatgttgactcctccgatgaacaagag 7635000  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 13085421 - 13085483
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 172  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |||||||||    
T  13085421 ccctcctacatcagtctcttccatctctgaagaactcgaccccgagttctcatcttgataaag 13085483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 9260367 - 9260297
Alignment:
Q  118 catcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgt 188  Q
    ||||| ||||||| || ||| |||||||||| |||||||||| ||||||||||||| |||| |||| ||||    
T  9260367 catcaatctcctctacgtctaaagaactcgaccccgagttcttattttgataaagaacttctcatggatgt 9260297  T

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Target: scaffold0054 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 49122 - 49002
Alignment:
Q  112 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat-aaagagcttcccatgcatgtcgactcctccaatgaacaagag 210  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||| ||| |||| ||||| ||| |||||||||| ||||| ||| ||||||| |||    
T  49122 ctcctacatcagtctcctccacctctgaagaactcaaccccgagttcttattctgataaaagaactt-ccatgcatgttgactcttcctatgaacacgag 49024  T
Q  211 cacacccacccggatcccattg 232  Q
     |||||||||||||||||||||    
T  49023 aacacccacccggatcccattg 49002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 10461 - 10361
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    |||||||||||||||||| ||||||||| | ||| | || ||| |||||||||| ||||||||||||||||||| || | ||||||||||||||||||||    
T  10461 ccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgaatattgactcctccaatgaacaaga 10362  T
Q  210 g 210  Q
    |    
T  10361 g 10361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 37523 - 37404
Alignment:
Q  112 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgat-aaagagcttcccatgcatgtcgactcctccaatgaacaagag 210  Q
    ||||||||||||||||||||||||||||||||||||| ||| | |||| ||| |||| ||||||||| |||||||||| ||||| ||| ||||||  |||    
T  37523 ctcctacatcagtctcctccacctctgaagaactcga-cccaaattcttattctgataaaagagctt-ccatgcatgttgactcttcctatgaaccggag 37426  T
Q  211 cacacccacccggatcccattg 232  Q
     || |||| |||||||||||||    
T  37425 aacgcccaaccggatcccattg 37404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 232
Target Start/End: Original strand, 365879 - 365999
Alignment:
Q  111 cctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 210  Q
    |||||| ||||| ||||||||||||||||||||||||| | ||||||||| |||||||||||||||| ||||| |||| ||||| ||||||||||| |||    
T  365879 cctcctgcatcaatctcctccacctctgaagaactcgacctcgagttctcgttttgataaagagctt-ccatgtatgttgactcttccaatgaacaggag 365977  T
Q  211 cacacccacccggatcccattg 232  Q
      ||||| || |||||||||||    
T  365978 accaccctccgggatcccattg 365999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 8536658 - 8536780
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaaga 209  Q
    |||||||||||||| ||| ||||||||| ||||||||||  ||||||||| ||| ||||||| || ||| |||  |||| ||||| ||||||||||||||    
T  8536658 ccctcctacatcagcctcttccacctctaaagaactcgactccgagttcttattctgataaaaagtttctcatatatgttgactcttccaatgaacaaga 8536757  T
Q  210 gcacacccacccggatcccattg 232  Q
    |  ||||| || |||||||||||    
T  8536758 gatcaccctcctggatcccattg 8536780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 3064066 - 3064116
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctc 160  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  3064066 ccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 3064116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 2473000 - 2473084
Alignment:
Q  126 tcctccacctctgaagaactcgatcccgagttctcattttgat--aaagagcttcccatgcatgtcgactcctccaatgaacaag 208  Q
    |||||||| | | |||||||||| |||||||||||||| ||||  ||| | |||| ||||||||| |||| ||||||||||||||    
T  2473000 tcctccacttttaaagaactcgaccccgagttctcattctgataaaaaaaacttctcatgcatgttgacttctccaatgaacaag 2473084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 24516698 - 24516743
Alignment:
Q  113 tcctacatcagtctcctccacctctgaagaactcgatcccgagttc 158  Q
    |||||||||| |||||||||| || ||||||||||| |||||||||    
T  24516698 tcctacatcaatctcctccacttcagaagaactcgaccccgagttc 24516743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 45943 - 46005
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaag 172  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  45943 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 46005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 145544 - 145444
Alignment:
Q  110 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgca-tgtcgactcctccaatgaacaag 208  Q
    ||||||||||||||||||||||||||| |||||||| || |||||||| | ||| |||||||||| |  || | || ||| ||||||| |||||||||||    
T  145544 ccctcctacatcagtctcctccacctcagaagaacttga-cccgagttattattctgataaagagttgtccgttcattgttgactccttcaatgaacaag 145446  T
Q  209 ag 210  Q
    ||    
T  145445 ag 145444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 144179 - 144282
Alignment:
Q  110 ccctcctacatcagt---ctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgca-tgtcgactcctccaatgaac 205  Q
    ||||||| |||||||   |||||||| |||||||||||| || |||||||||| ||| |||||||||| |  |||| || ||||||||||| | ||||||    
T  144179 ccctcctgcatcagtctcctcctccatctctgaagaacttga-cccgagttcttattctgataaagagttgtccattcattgtcgactccttcgatgaac 144277  T
Q  206 aagag 210  Q
    |||||    
T  144278 aagag 144282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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