View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7979_low_5 (Length: 276)
Name: NF7979_low_5
Description: NF7979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7979_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 48749204 - 48748943
Alignment:
| Q |
15 |
aagaacaagctaaaattaacagtgcaaaagctatgagacctaacatggctgctaagcctccaaaaaggtaaggaattggtgagtgccatgatgagtgatt |
114 |
Q |
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| T |
48749204 |
aagaacaagctaaaattaacagtgcaaaagctatgagacctaacatggctgctaagcctccaaaaaggtaaggaattggtgagtgccatgatgagtgatt |
48749105 |
T |
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| Q |
115 |
catcattgaagctgtggacgaaggtgctaatgatgagtaactagttgaagatgttgtgatgcttctcatgtttgttgattttgatttgaaaaatgtttct |
214 |
Q |
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| T |
48749104 |
catcattgaagctgtggatgaaggtgctaatgatgagtaactagttgaagatgttgtgatgcttctcatgtttgttgattttgatttgaaaaatgtttct |
48749005 |
T |
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| Q |
215 |
ggtgtttgagattggttttaatttggtagagagaaataaagaggtgaagaatgagagataga |
276 |
Q |
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| T |
48749004 |
ggtgtttgagattggttttaatttggtagagagaaataaagaggtgaagaatgtgagataga |
48748943 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 53701370 - 53701452
Alignment:
| Q |
29 |
attaacagtgcaaaagctatgagacctaacatggctgctaagcctccaaaaaggtaaggaattggtgagtgccatgatgagtg |
111 |
Q |
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| T |
53701370 |
attaatagagcaaaagctattaaacctaacatggctgctaaaccaccgaacaagtatggaactggtgaatgccatggtgagtg |
53701452 |
T |
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