View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7980_high_13 (Length: 242)
Name: NF7980_high_13
Description: NF7980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7980_high_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 9603434 - 9603657
Alignment:
| Q |
19 |
ctgacttccttacatatggaataaaatcattgtctcaagatgtgttacctttgtttaaatctgtaatctttgatttgaatttcactccaaatgagtttga |
118 |
Q |
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| T |
9603434 |
ctgacttccttacatatggaataaaatcattgtctcaagatgtgttacctttgtttaaatctgtaatctttgatttgaatttcactccaaatgagtttga |
9603533 |
T |
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| Q |
119 |
tagcttcgatgaagtgcgtgacttatttgaaggtggaattgaacttcctacacatatattgagcaaaatcagtcccttaccagtactcaaggaaattttc |
218 |
Q |
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| T |
9603534 |
tagcttcgatgaagtgcgtgacttatttgaaggtggaattgaacttcctacacatatattgagcaaaatcagtcccttaccagtactcaaggaaattttc |
9603633 |
T |
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| Q |
219 |
cgcactgatggtgaacaagtcctc |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
9603634 |
cgcactgatggtgaacaagtcctc |
9603657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 33 - 237
Target Start/End: Complemental strand, 6451888 - 6451684
Alignment:
| Q |
33 |
tatggaataaaatcattgtctcaagatgtgttacctttgtttaaatctgtaatctttgatttgaatttcactccaaatgagtttgatagcttcgatgaag |
132 |
Q |
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| T |
6451888 |
tatggaataaagtcattgtcacaagacgttttgcctttgttacaatctgtaatttttgatctgaatttcaccccgaatgagtttgatagcttcgatgaag |
6451789 |
T |
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| Q |
133 |
tgcgt-gacttatttgaaggtggaattgaacttcctacacatatattgagcaaaatcagtcccttaccagtactcaaggaaattttccgcactgatggtg |
231 |
Q |
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| T |
6451788 |
tgcgtggactt-ttcgaaggtggaattaagcttcctacagatatactcagccaaatcagccccttgccagcccttaaggaaatcctccgcacagacggtg |
6451690 |
T |
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| Q |
232 |
aacaag |
237 |
Q |
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| T |
6451689 |
aacaag |
6451684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 6457990 - 6457769
Alignment:
| Q |
21 |
gacttccttacatatggaataaaatcattgtctcaagatgtgttacctttgtttaaatctgtaatctttgatttgaatttcactccaaatgagtttgata |
120 |
Q |
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|||||||||| ||||||||||||||| |||||||| |||| |||| |||||||||||||| || ||||| | |||||||| ||||||||||| |||| |
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| T |
6457990 |
gacttccttatgtatggaataaaatcactgtctcaaaatgtcataccattgtttaaatctgtgatttttgacctcaatttcacaccaaatgagttcgata |
6457891 |
T |
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| Q |
121 |
gcttcgatgaagtgcgt-gacttatttgaaggtggaattgaacttcctacacatatattgagcaaaatcagtcccttaccagtactcaaggaaattttcc |
219 |
Q |
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| T |
6457890 |
gcttcgatgaagtacgtggactt-ttcgaaggtgggattaagcttcctacagatatacttagtcaaattagtcccttaccggcccttaaggaaatctttc |
6457792 |
T |
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| Q |
220 |
gcactgatggtgaacaagtcctc |
242 |
Q |
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| T |
6457791 |
gcactgacggtgaacaagtcctc |
6457769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 42694025 - 42693868
Alignment:
| Q |
78 |
tctgtaatctttgatttgaatttcactccaaatgagtttgatagcttcgatgaagtgcgtgacttatttgaaggtggaattgaacttcctacacatatat |
177 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| | || || | ||| ||||||||| | || || ||| || || |
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| T |
42694025 |
tctgtaatctttgatttaaatttcacaccaaatgagtttgatagctttgatgaagttcatggattgtatgagggtggaattaagctgccaacagatgtac |
42693926 |
T |
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| Q |
178 |
tgagcaaaatcagtcccttaccagtactcaaggaaattttccgcactgatggtgaaca |
235 |
Q |
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| T |
42693925 |
ttagcaagataagtccgttacctgttctcaaagaaatctttcgaaccgatggtgaaca |
42693868 |
T |
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