View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7980_high_14 (Length: 234)

Name: NF7980_high_14
Description: NF7980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7980_high_14
NF7980_high_14
[»] chr5 (26 HSPs)
chr5 (1-234)||(9603685-9603915)
chr5 (1-104)||(2740273-2740376)
chr5 (1-103)||(33149636-33149738)
chr5 (1-103)||(28177775-28177877)
chr5 (1-103)||(35785199-35785301)
chr5 (1-103)||(35943890-35943992)
chr5 (5-102)||(16327902-16327999)
chr5 (1-105)||(13811650-13811754)
chr5 (1-105)||(18520882-18520986)
chr5 (1-103)||(26720516-26720618)
chr5 (1-103)||(26990265-26990367)
chr5 (3-103)||(14831814-14831914)
chr5 (35-107)||(15409642-15409714)
chr5 (1-105)||(36732940-36733044)
chr5 (1-80)||(39557515-39557594)
chr5 (1-103)||(40145407-40145509)
chr5 (5-103)||(42414304-42414402)
chr5 (1-104)||(2252166-2252269)
chr5 (1-104)||(6679697-6679800)
chr5 (40-98)||(10356639-10356698)
chr5 (3-105)||(31008986-31009088)
chr5 (1-103)||(33825322-33825424)
chr5 (1-105)||(3921263-3921367)
chr5 (40-106)||(39688934-39689000)
chr5 (14-83)||(10227905-10227974)
chr5 (3-103)||(20073516-20073616)
[»] chr7 (32 HSPs)
chr7 (1-104)||(36362025-36362128)
chr7 (1-104)||(36361911-36362014)
chr7 (1-104)||(3434561-3434664)
chr7 (1-103)||(19329842-19329944)
chr7 (1-105)||(8080381-8080485)
chr7 (1-100)||(3783998-3784097)
chr7 (1-106)||(7389386-7389491)
chr7 (1-105)||(19436185-19436289)
chr7 (1-105)||(38837215-38837319)
chr7 (1-105)||(40957705-40957809)
chr7 (1-103)||(35137533-35137635)
chr7 (24-106)||(36208170-36208252)
chr7 (29-105)||(45223040-45223116)
chr7 (1-100)||(3694370-3694469)
chr7 (1-103)||(38267040-38267142)
chr7 (1-98)||(35522881-35522978)
chr7 (1-105)||(35468853-35468957)
chr7 (1-104)||(22343360-22343463)
chr7 (1-104)||(41915740-41915843)
chr7 (1-103)||(4999512-4999614)
chr7 (1-103)||(41423682-41423784)
chr7 (34-103)||(46374833-46374902)
chr7 (37-105)||(10343597-10343665)
chr7 (1-72)||(16374822-16374893)
chr7 (55-105)||(11044186-11044236)
chr7 (38-103)||(32564461-32564526)
chr7 (35-103)||(21234401-21234469)
chr7 (38-105)||(38044195-38044262)
chr7 (34-104)||(46033832-46033902)
chr7 (1-102)||(32951491-32951592)
chr7 (34-103)||(39255954-39256023)
chr7 (42-103)||(40846152-40846213)
[»] chr3 (29 HSPs)
chr3 (1-105)||(49607412-49607516)
chr3 (1-105)||(27714889-27714993)
chr3 (1-103)||(14623837-14623939)
chr3 (1-102)||(13898053-13898154)
chr3 (1-103)||(26141530-26141632)
chr3 (1-103)||(53982011-53982113)
chr3 (1-98)||(52629305-52629402)
chr3 (1-106)||(54868893-54868998)
chr3 (24-104)||(8956761-8956841)
chr3 (35-106)||(11095385-11095456)
chr3 (1-103)||(33644200-33644302)
chr3 (1-102)||(31456690-31456791)
chr3 (34-106)||(35965805-35965877)
chr3 (34-105)||(11347953-11348024)
chr3 (1-104)||(17470404-17470507)
chr3 (1-91)||(20764913-20765003)
chr3 (1-99)||(48587089-48587187)
chr3 (1-106)||(33118849-33118954)
chr3 (1-100)||(25407145-25407245)
chr3 (24-104)||(35536625-35536705)
chr3 (1-104)||(24699952-24700055)
chr3 (1-103)||(8076393-8076495)
chr3 (1-107)||(41189762-41189868)
chr3 (34-103)||(51419391-51419460)
chr3 (24-91)||(39670023-39670090)
chr3 (35-105)||(36707456-36707526)
chr3 (35-104)||(21746213-21746284)
chr3 (1-103)||(41080709-41080809)
chr3 (1-105)||(35093583-35093687)
[»] chr8 (27 HSPs)
chr8 (1-103)||(1179938-1180040)
chr8 (1-102)||(5957831-5957932)
chr8 (1-105)||(42221513-42221617)
chr8 (1-103)||(34012294-34012396)
chr8 (3-104)||(37038478-37038579)
chr8 (35-98)||(10621119-10621182)
chr8 (1-104)||(44507085-44507188)
chr8 (1-103)||(12831047-12831149)
chr8 (1-103)||(15197333-15197435)
chr8 (1-103)||(40423941-40424043)
chr8 (40-113)||(4854900-4854973)
chr8 (1-106)||(14547919-14548024)
chr8 (1-103)||(504119-504221)
chr8 (1-103)||(43414579-43414681)
chr8 (40-105)||(24307627-24307692)
chr8 (35-103)||(15048214-15048281)
chr8 (1-103)||(23122595-23122697)
chr8 (40-106)||(24307830-24307896)
chr8 (34-103)||(20074965-20075034)
chr8 (1-105)||(16056399-16056503)
chr8 (1-105)||(16383375-16383479)
chr8 (38-105)||(34307214-34307281)
chr8 (1-105)||(10284629-10284733)
chr8 (1-104)||(32032724-32032826)
chr8 (1-83)||(8841430-8841512)
chr8 (1-103)||(30183873-30183975)
chr8 (1-49)||(42354586-42354634)
[»] chr2 (31 HSPs)
chr2 (1-106)||(9058477-9058582)
chr2 (1-104)||(7465733-7465836)
chr2 (1-103)||(13438343-13438445)
chr2 (1-103)||(17473020-17473122)
chr2 (1-105)||(20700813-20700917)
chr2 (1-105)||(30915461-30915565)
chr2 (1-105)||(33436098-33436202)
chr2 (1-104)||(5574486-5574589)
chr2 (1-100)||(19930818-19930917)
chr2 (1-100)||(28863458-28863557)
chr2 (1-103)||(40613900-40614002)
chr2 (1-103)||(40701478-40701580)
chr2 (1-106)||(10249380-10249485)
chr2 (24-104)||(33436210-33436290)
chr2 (1-103)||(27864704-27864806)
chr2 (1-102)||(41575138-41575240)
chr2 (35-104)||(2533123-2533191)
chr2 (3-104)||(32505648-32505749)
chr2 (1-105)||(42257191-42257295)
chr2 (1-105)||(45097733-45097837)
chr2 (35-106)||(17823781-17823852)
chr2 (35-103)||(28381687-28381755)
chr2 (24-115)||(26891525-26891616)
chr2 (1-103)||(17820002-17820104)
chr2 (35-105)||(38273174-38273244)
chr2 (1-103)||(38732354-38732456)
chr2 (35-105)||(38882846-38882915)
chr2 (35-103)||(4060685-4060753)
chr2 (1-83)||(2997485-2997567)
chr2 (34-104)||(36168835-36168905)
chr2 (38-103)||(43490121-43490186)
[»] chr6 (21 HSPs)
chr6 (1-105)||(23128125-23128229)
chr6 (1-103)||(31953028-31953130)
chr6 (1-104)||(11427615-11427720)
chr6 (1-103)||(17598554-17598656)
chr6 (1-99)||(28536486-28536582)
chr6 (1-103)||(32869678-32869780)
chr6 (1-105)||(12732480-12732584)
chr6 (1-100)||(22880656-22880755)
chr6 (37-102)||(946377-946442)
chr6 (1-98)||(9379710-9379807)
chr6 (1-104)||(31976247-31976350)
chr6 (1-106)||(15990040-15990145)
chr6 (1-105)||(30341358-30341462)
chr6 (35-103)||(31109432-31109500)
chr6 (35-105)||(31110793-31110861)
chr6 (1-103)||(15508022-15508124)
chr6 (1-105)||(6209463-6209567)
chr6 (21-105)||(15832575-15832659)
chr6 (1-87)||(4231564-4231650)
chr6 (38-104)||(22422053-22422119)
chr6 (1-103)||(29857827-29857929)
[»] chr4 (26 HSPs)
chr4 (1-105)||(50052426-50052530)
chr4 (1-105)||(480445-480549)
chr4 (1-103)||(6034044-6034146)
chr4 (1-106)||(48183047-48183152)
chr4 (1-105)||(42044365-42044469)
chr4 (23-103)||(50526191-50526271)
chr4 (36-103)||(40574779-40574846)
chr4 (1-103)||(11511460-11511562)
chr4 (20-106)||(29547976-29548062)
chr4 (1-105)||(29239884-29239988)
chr4 (1-104)||(29234243-29234346)
chr4 (1-103)||(3481654-3481756)
chr4 (1-103)||(41236347-41236449)
chr4 (38-103)||(8343198-8343263)
chr4 (1-106)||(23608232-23608337)
chr4 (1-106)||(29977882-29977987)
chr4 (38-106)||(55475188-55475256)
chr4 (1-105)||(24995105-24995209)
chr4 (1-104)||(47986207-47986310)
chr4 (1-104)||(50813890-50813993)
chr4 (37-103)||(31910192-31910258)
chr4 (5-103)||(54473535-54473633)
chr4 (1-106)||(47104541-47104646)
chr4 (1-105)||(19670714-19670818)
chr4 (35-98)||(53352598-53352660)
chr4 (1-83)||(17983741-17983823)
[»] chr1 (27 HSPs)
chr1 (1-103)||(27564733-27564835)
chr1 (1-103)||(47452318-47452420)
chr1 (3-104)||(51898683-51898784)
chr1 (3-105)||(2581913-2582015)
chr1 (1-103)||(3000319-3000421)
chr1 (1-103)||(9474874-9474976)
chr1 (3-103)||(3302533-3302633)
chr1 (1-105)||(32813245-32813349)
chr1 (1-105)||(38595152-38595256)
chr1 (4-103)||(37649198-37649297)
chr1 (1-104)||(50630457-50630560)
chr1 (1-100)||(44548374-44548473)
chr1 (1-103)||(43132-43234)
chr1 (1-103)||(41608491-41608593)
chr1 (5-103)||(48716284-48716382)
chr1 (1-105)||(8346386-8346490)
chr1 (5-105)||(38632323-38632423)
chr1 (34-105)||(23597122-23597193)
chr1 (1-104)||(37926436-37926539)
chr1 (35-106)||(49811559-49811630)
chr1 (34-104)||(7740732-7740802)
chr1 (1-103)||(50590998-50591100)
chr1 (5-98)||(44453984-44454077)
chr1 (1-105)||(5958998-5959102)
chr1 (1-96)||(26440741-26440836)
chr1 (1-104)||(41758804-41758907)
chr1 (37-106)||(26274429-26274498)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-105)||(10107-10211)
[»] scaffold1268 (1 HSPs)
scaffold1268 (1-103)||(927-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (1-103)||(927-1029)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-83)||(152518-152600)
[»] scaffold0237 (1 HSPs)
scaffold0237 (1-103)||(4029-4131)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 9603915 - 9603685
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||||||||||||| |||| |||| || ||||||||||||||||||||||| ||||  ||||||| ||||||||||||| ||| ||||||||    
T  9603915 agagaaagtgtgattgtatggggtccatatgaccatgtgtcagatttttgtgtaggtgtgaatgagtgtattatcacctaaggatgtatatgtatcatta 9603816  T
Q  101 ctcttacttaatataatgctaacacaggtattgtgactttataatttatatttatgggaaatgctaa-atttgccctaagggttagggcattggaaaata 199  Q
    ||    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9603815 ct----cttaatataatgctaacacagatattgtgactttataatctatatttatgggaaatgctaacatttgccctaagggttagggcattggaaaata 9603720  T
Q  200 tgttaatttattttataaaagattaataatgtacc 234  Q
    ||||||||||||||| |||||||||||||||||||    
T  9603719 tgttaatttattttacaaaagattaataatgtacc 9603685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 2740376 - 2740273
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||||||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||||||||||| ||||||||    
T  2740376 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatta 2740277  T
Q  101 ctct 104  Q
    ||||    
T  2740276 ctct 2740273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 33149636 - 33149738
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||||||||| |||  |||||||| |||||||||| |||||||| || ||||||||||||||||| ||||||| ||||||||    
T  33149636 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatta 33149735  T
Q  101 ctc 103  Q
    |||    
T  33149736 ctc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 28177877 - 28177775
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||  ||| |||||||||||||||||||| |||||||| || |||||| |||||||||||||||||| |||||| |    
T  28177877 agagaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 28177778  T
Q  101 ctc 103  Q
    |||    
T  28177777 ctc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 35785301 - 35785199
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||||||||  ||||||||| | |  ||||||||||||||||||| ||||||||  | |||||| |||||||||| ||||||| ||||||||    
T  35785301 agagaaagtgtgattgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 35785202  T
Q  101 ctc 103  Q
    |||    
T  35785201 ctc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 35943890 - 35943992
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| |||| |||||||||| | |  ||||||||||||||||||| ||||||||  |||||||| |||||||||| ||||||| |||||| |    
T  35943890 agagaaagtgtgcttgtgtgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataa 35943989  T
Q  101 ctc 103  Q
    |||    
T  35943990 ctc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 16327999 - 16327902
Alignment:
Q  5 aaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattact 102  Q
    |||||||| |||| || | | ||||||| |||||||||||||||| ||| |||||||||||||||||| |||||||||||| | ||| ||||||||||    
T  16327999 aaagtgtgcttgtgtgaggtgcacatgaacacgtgtcagatttttatgtgggtgtcaatggatgtattgccacctaaggatatttatctatcattact 16327902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 13811754 - 13811650
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| ||||||||  |||||||| |||||||||| ||||||| |||| |||    
T  13811754 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcttta 13811655  T
Q  101 ctctt 105  Q
    |||||    
T  13811654 ctctt 13811650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 18520882 - 18520986
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||||    
T  18520882 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 18520981  T
Q  101 ctctt 105  Q
     ||||    
T  18520982 ttctt 18520986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26720618 - 26720516
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||||||||  ||  |||||||||||||||| ||||||||| || || |||||| |||||||||||||||||| |||||| |    
T  26720618 agagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 26720519  T
Q  101 ctc 103  Q
    |||    
T  26720518 ctc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26990367 - 26990265
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||||||||  ||  |||||||||||||||| ||||||||| || || |||||| |||||||||||||||||| |||||| |    
T  26990367 agagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 26990268  T
Q  101 ctc 103  Q
    |||    
T  26990267 ctc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 14831914 - 14831814
Alignment:
Q  3 agaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattact 102  Q
    |||||||||| ||||  ||||||||| |||  ||||||||||||||| ||| |||||||| || |||||| |||||||||  ||||||| ||||||||||    
T  14831914 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattact 14831815  T
Q  103 c 103  Q
    |    
T  14831814 c 14831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 15409642 - 15409714
Alignment:
Q  35 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactcttac 107  Q
    ||||||||||||||||||| |||||||| | |||||||  ||||||||||||||||| |||||| ||||||||    
T  15409642 acgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactcttac 15409714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 36732940 - 36733044
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  | ||||||||||||||||| |||||||| || |||||| | |||||||| ||||||| ||||||||    
T  36732940 agagaaagtgtgcttgtgcggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcatta 36733039  T
Q  101 ctctt 105  Q
    |||||    
T  36733040 ctctt 36733044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 39557515 - 39557594
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccaccta 80  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||||||||| | ||| ||  | ||||||||||||||    
T  39557515 agagaaagtgtgattgtatggggtccatgtgatcacgtgtcagatttttgtgtggatgttaagaggtgtattaccaccta 39557594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 40145509 - 40145407
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| | ||| || || |||||| |||||||||| ||||||| ||||||||    
T  40145509 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcatta 40145410  T
Q  101 ctc 103  Q
    |||    
T  40145409 ctc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 42414304 - 42414402
Alignment:
Q  5 aaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    |||||||| ||||  ||| |||||||||  ||||||||||||||||||| |||||||| || |||||| |||||||  | ||||||| |||||||||||    
T  42414304 aaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctactggtgtctatgtatcattactc 42414402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 2252166 - 2252269
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||  ||| |||| |||  ||| |||||||||||||||| |||||||| || |||||| |||||||||||||| ||| |||||| |    
T  2252166 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataa 2252265  T
Q  101 ctct 104  Q
    ||||    
T  2252266 ctct 2252269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 6679800 - 6679697
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    ||||||| |||| ||||  ||| ||||  ||| |||||||||||||||||||| ||||||||  | |||||| |||||||| ||||||||| |||||| |    
T  6679800 agagaaaatgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataa 6679701  T
Q  101 ctct 104  Q
    ||||    
T  6679700 ctct 6679697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 10356698 - 10356639
Alignment:
Q  40 tcagatttttgtgtaggtgtcaatgg-atgtattaccacctaaggatgtctatatatcat 98  Q
    |||||||||||||| ||||||||||| ||||||| |||||||||||||||||| ||||||    
T  10356698 tcagatttttgtgtgggtgtcaatgggatgtattgccacctaaggatgtctatgtatcat 10356639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 31009088 - 31008986
Alignment:
Q  3 agaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattact 102  Q
    |||||||||| ||||  ||||||||| |||  ||||||||||||||||||| |||||  | | |||||||  ||||||||||||| ||| |||||| |||    
T  31009088 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtggaagaatgtattgtcacctaaggatgtttatgtatcataact 31008989  T
Q  103 ctt 105  Q
    |||    
T  31008988 ctt 31008986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 33825322 - 33825424
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| |||| |  | | ||||||| |||||||||||||||| ||| |||||||| |  |||||| ||||||||| ||||||||  |||||||    
T  33825322 agagaaagtgtgcttgtgtaaggttcacatgaacacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagaatgtctatgcatcatta 33825421  T
Q  101 ctc 103  Q
    |||    
T  33825422 ctc 33825424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 3921263 - 3921367
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||  ||| |||| |||  ||| |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| |    
T  3921263 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 3921362  T
Q  101 ctctt 105  Q
    |||||    
T  3921363 ctctt 3921367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 39688934 - 39689000
Alignment:
Q  40 tcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 106  Q
    |||||||||||||| |||||||| ||||||||| |||| ||||| ||| ||| |||||| |||||||    
T  39688934 tcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcataactctta 39689000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 10227905 - 10227974
Alignment:
Q  14 ttgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaagg 83  Q
    |||| ||| |||||||| ||||| |||||||||||||| | |||||||| ||||||||| |||| |||||    
T  10227905 ttgtgtggaatccacataatcacatgtcagatttttgtatcggtgtcaagggatgtattgccacataagg 10227974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 20073516 - 20073616
Alignment:
Q  3 agaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattact 102  Q
    |||||||||| ||||   || ||||| || |||||||  |||||||| |||  ||||||| || ||||||  || |||| ||||||||||||||||||||    
T  20073516 agaaagtgtgcttgtgcagggtccacgtggtcacgtgcaagatttttatgtgagtgtcaaagggtgtattgtcatctaatgatgtctatatatcattact 20073615  T
Q  103 c 103  Q
    |    
T  20073616 c 20073616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 36362128 - 36362025
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| |||| |||| ||||| |||  ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||||||    
T  36362128 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcatta 36362029  T
Q  101 ctct 104  Q
    ||||    
T  36362028 ctct 36362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 36361911 - 36362014
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| |||| |||| ||||| |||  ||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||||| ||||||||    
T  36361911 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcatta 36362010  T
Q  101 ctct 104  Q
    ||||    
T  36362011 ctct 36362014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 3434664 - 3434561
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||||||||| |||  ||||||||| ||||||||| |||||||| || |||||| |||||||||||||||||| ||||||||    
T  3434664 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatta 3434565  T
Q  101 ctct 104  Q
    ||||    
T  3434564 ctct 3434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 19329944 - 19329842
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||| ||||||||||||||||||| ||||||||  | |||||| |||||||||||||||||| ||||||||    
T  19329944 agagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcatta 19329845  T
Q  101 ctc 103  Q
    |||    
T  19329844 ctc 19329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 8080381 - 8080485
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||| |||||||||||| || |||||| |||||||||| ||||||| ||||||||    
T  8080381 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 8080480  T
Q  101 ctctt 105  Q
    |||||    
T  8080481 ctctt 8080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 3784097 - 3783998
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||||||||| |||  ||||||||||||||||||| ||||||||  |||||||| |||||||||| ||||||| ||||||||    
T  3784097 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcatta 3783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 7389491 - 7389386
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| |  |||||| |||||||||| ||||||| ||||||||    
T  7389491 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcatta 7389392  T
Q  101 ctctta 106  Q
    ||||||    
T  7389391 ctctta 7389386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 19436185 - 19436289
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| || |  ||||||||| |||  ||||||||||||||||||| ||||||||  | ||||||  ||||||||||||||||| ||||||||    
T  19436185 agagaaagtgtgcttatgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcatta 19436284  T
Q  101 ctctt 105  Q
    |||||    
T  19436285 ctctt 19436289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 38837319 - 38837215
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  |||||||||||||||||||||||||  | || |||||| |||||||||| ||||||| ||||||||    
T  38837319 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcatta 38837220  T
Q  101 ctctt 105  Q
    |||||    
T  38837219 ctctt 38837215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 40957809 - 40957705
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||| ||||||||| |||  ||||||||||||||||||| ||| |||| |  |||||| |||||||||  ||||||| ||||||||    
T  40957809 agagaaagtgtgcttgtacgggatccacgtgactacgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcatta 40957710  T
Q  101 ctctt 105  Q
    |||||    
T  40957709 ctctt 40957705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 35137635 - 35137533
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  |||||| |||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||||    
T  35137635 agagaaagtgtgtttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcatta 35137536  T
Q  101 ctc 103  Q
    |||    
T  35137535 ctc 35137533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 36208252 - 36208170
Alignment:
Q  24 tccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 106  Q
    ||||| ||| ||| |||||| ||||||||| |||||||||| |||||||||||||||||| ||||||| |||||| |||||||    
T  36208252 tccacgtgaccacatgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataactctta 36208170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 45223116 - 45223040
Alignment:
Q  29 atgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 105  Q
    ||||| ||||||||||||||||||||| |||  | | ||||||| |||||||||||||| |||||||||||||||||    
T  45223116 atgattacgtgtcagatttttgtgtagatgttcaagaatgtattgccacctaaggatgtatatatatcattactctt 45223040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 3694469 - 3694370
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  |||||||||||||  ||||||||||||||||||| ||||| ||  | ||||||  ||||||||| ||| ||||||||||||    
T  3694469 agagaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgtcacctaagggtgtgtatatatcatta 3694370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 38267142 - 38267040
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || ||||||  ||| ||||| ||||||| ||||||||    
T  38267142 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcatta 38267043  T
Q  101 ctc 103  Q
    |||    
T  38267042 ctc 38267040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 35522978 - 35522881
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 98  Q
    |||||||||||| ||||  |||||||| |||  |||||||||||||||||||| ||||| ||  | |||||| |||| ||||||||||||| ||||||    
T  35522978 agagaaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcat 35522881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 35468853 - 35468957
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||   || |||||||| |||| | | |||||||| ||| ||||||||  |||||||| ||| |||||||||||||| ||||||||    
T  35468853 agagaaagtgtgtttgtgcagggtccacatggtcacatattagatttttatgtgggtgtcaaatgatgtattgccatctaaggatgtctatgtatcatta 35468952  T
Q  101 ctctt 105  Q
    |||||    
T  35468953 ctctt 35468957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 22343463 - 22343360
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||  ||| |||| ||| |||| |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| |    
T  22343463 agagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 22343364  T
Q  101 ctct 104  Q
    ||||    
T  22343363 ctct 22343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 41915843 - 41915740
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||  ||| |||| |||  ||| ||||||||||||||||||||||||| || |||||| |||||||||| ||| ||| |||||| |    
T  41915843 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 41915744  T
Q  101 ctct 104  Q
    ||||    
T  41915743 ctct 41915740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 4999512 - 4999614
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  |||| |||||||||||||| ||||||||  | |||||| ||| |||||| ||||||| ||||||||    
T  4999512 agagaaagtgtgtttgtgcggggtccacgtgactacgtatcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcatta 4999611  T
Q  101 ctc 103  Q
    |||    
T  4999612 ctc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 41423784 - 41423682
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    ||||||| | || ||||| |||||| || ||| ||| ||||||||||||||||| |||||||  | |||||||||| |||| ||||||||| |||||| |    
T  41423784 agagaaaatatgcttgtacgggatctacgtgaccacatgtcagatttttgtgtaagtgtcaagaggtgtattaccatctaatgatgtctatgtatcataa 41423685  T
Q  101 ctc 103  Q
    |||    
T  41423684 ctc 41423682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 46374833 - 46374902
Alignment:
Q  34 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    |||||||||||||||||||| ||||| || || ||| || |||||||||||||||||| |||||| ||||    
T  46374833 cacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 10343597 - 10343665
Alignment:
Q  37 gtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 105  Q
    ||||||||||||||||| ||||||||    |||||| |||||||||| ||||||| |||||||||||||    
T  10343597 gtgtcagatttttgtgtgggtgtcaagatgtgtatttccacctaagggtgtctatgtatcattactctt 10343665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 16374822 - 16374893
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtatt 72  Q
    |||||| ||||| |||| || ||||||| ||| |||||||||||||||||||| | |||||| |||||||||    
T  16374822 agagaatgtgtgcttgtgtgagatccacgtgaccacgtgtcagatttttgtgtggatgtcaagggatgtatt 16374893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 11044236 - 11044186
Alignment:
Q  55 ggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 105  Q
    |||||||| ||||||||| |||||||||| ||||||| |||||||||||||    
T  11044236 ggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactctt 11044186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 32564461 - 32564526
Alignment:
Q  38 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    |||||||||||||||| |||||||| || |||||| ||||||||| |||| ||| |||||| ||||    
T  32564461 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcataactc 32564526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 21234469 - 21234401
Alignment:
Q  35 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    |||||||| ||||||||||  ||||||| || ||||||  ||||||||||||||||| |||||| ||||    
T  21234469 acgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataactc 21234401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 38044262 - 38044195
Alignment:
Q  38 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 105  Q
    |||||||||||||||| | |||||| || |||||| |||||||||| ||| ||| |||||| ||||||    
T  38044262 tgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 38044195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 46033832 - 46033902
Alignment:
Q  34 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 104  Q
    |||||||||||||||| ||| ||||| || || |||||| ||||||||| || ||||| |||||| |||||    
T  46033832 cacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactct 46033902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 32951491 - 32951592
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  |||||| |||||||||||| | ||| || |||||||||  || |||||  ||||||| ||||||||    
T  32951491 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtggatgttaaaggatgtattgtcatctaagagtgtctatgtatcatta 32951590  T
Q  101 ct 102  Q
    ||    
T  32951591 ct 32951592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 39255954 - 39256023
Alignment:
Q  34 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    |||||||||||||||||| | ||| ||||  | |||||| |||||||||| ||||||| |||||| ||||    
T  39255954 cacgtgtcagatttttgtatgggtatcaagtggtgtattgccacctaaggttgtctatgtatcataactc 39256023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 40846152 - 40846213
Alignment:
Q  42 agatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    |||||||||||| | |||||| || |||||| |||||||||||||| ||| |||||| ||||    
T  40846152 agatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 49607516 - 49607412
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| |||| |||||||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||||    
T  49607516 agagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 49607417  T
Q  101 ctctt 105  Q
    |||||    
T  49607416 ctctt 49607412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 27714889 - 27714993
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| |||||||||  ||||||||||||||||||| |||||||| || ||||||||||||||| | ||||||| ||||||||    
T  27714889 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcatta 27714988  T
Q  101 ctctt 105  Q
    |||||    
T  27714989 ctctt 27714993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 14623837 - 14623939
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| |||| || | ||||||||| ||| |||||||||||| ||| |||||||| || |||||| |||||||||||||||||| ||||||||    
T  14623837 agagaaagtgtgcttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcatta 14623936  T
Q  101 ctc 103  Q
    |||    
T  14623937 ctc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 13898053 - 13898154
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| |||| || | ||||||||| |||||||||||||||| ||| |||||||| || |||||| |||||||||||||| ||| ||||||||    
T  13898053 agagaaagtgtgcttgtgtgaggtccacatgaacacgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctatcatta 13898152  T
Q  101 ct 102  Q
    ||    
T  13898153 ct 13898154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 26141530 - 26141632
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| |||| |||| ||||  ||| |||||||||||||||||||| ||||| || || |||||| |||||||||||||||||| |||||| |    
T  26141530 agagaaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 26141629  T
Q  101 ctc 103  Q
    |||    
T  26141630 ctc 26141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 53982113 - 53982011
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||||    
T  53982113 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 53982014  T
Q  101 ctc 103  Q
    |||    
T  53982013 ctc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 52629402 - 52629305
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 98  Q
    |||||||||||| ||||| ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||    
T  52629402 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 52629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 54868893 - 54868998
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||||||||  ||| ||||| | |  ||||||||||||||||||| ||||||||  | |||||| |||||||||| ||||||| ||||||||    
T  54868893 agagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 54868992  T
Q  101 ctctta 106  Q
    ||||||    
T  54868993 ctctta 54868998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 8956841 - 8956761
Alignment:
Q  24 tccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 104  Q
    ||||||||| ||||||||| |||||| ||| |||||||| ||||||||| |||| ||||||||||||| ||||||||||||    
T  8956841 tccacatgaacacgtgtcacatttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcattactct 8956761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 11095385 - 11095456
Alignment:
Q  35 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 106  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||||||||||    
T  11095385 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctta 11095456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 33644302 - 33644200
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| ||||| |||| ||||||| ||||||||    
T  33644302 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcatta 33644203  T
Q  101 ctc 103  Q
    |||    
T  33644202 ctc 33644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 31456791 - 31456690
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| |||||||||  ||||||||||||||||||| |||||||| || |||||| || |||| || ||||||| ||||||||    
T  31456791 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcatta 31456692  T
Q  101 ct 102  Q
    ||    
T  31456691 ct 31456690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 35965805 - 35965877
Alignment:
Q  34 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 106  Q
    |||||||||||||||| ||| |||||||| |||||||||| ||| ||||||||| ||| ||||||||||||||    
T  35965805 cacgtgtcagatttttatgtgggtgtcaaaggatgtattatcacttaaggatgtatatgtatcattactctta 35965877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 11347953 - 11348024
Alignment:
Q  34 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 105  Q
    |||||||||||||||||||| | |||||| |||||||||  ||||||||||||||||| |||||| ||||||    
T  11347953 cacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactctt 11348024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 17470507 - 17470404
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| |||| |||| ||||| |||  ||||||||||||||||||| ||||| ||  | |||||| |||||||| | ||||||| ||||||||    
T  17470507 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcatta 17470408  T
Q  101 ctct 104  Q
    ||||    
T  17470407 ctct 17470404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 20764913 - 20765003
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctat 91  Q
    |||||||||||| ||||| ||| ||||  ||  |||||||||||||||||||| ||||| || |  |||||||||||||||||||||||||    
T  20764913 agagaaagtgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctat 20765003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 48587089 - 48587187
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatt 99  Q
    |||||||||||  ||||  ||||||||| |||  ||||||||||||||| |||||||||||| || |||||| |||||||||| | ||||| |||||||    
T  48587089 agagaaagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtatcatt 48587187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 33118849 - 33118954
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| || |  ||||||||| |||  |||||||| |||||||||| |||||||| || ||||||  ||||||||| ||||||| |||||| |    
T  33118849 agagaaagtgtgtttctgagggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataa 33118948  T
Q  101 ctctta 106  Q
    ||||||    
T  33118949 ctctta 33118954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 25407145 - 25407245
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcaga-tttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatt 99  Q
    |||||||||||| |||| ||||||||| |||||||||||||||| |||||||||  ||||||| || | |||| ||||||| || ||| ||| |||||||    
T  25407145 agagaaagtgtgtttgtgtgggatccatatgatcacgtgtcagattttttgtgtgtgtgtcaaggggtatattgccacctatggttgtgtatgtatcatt 25407244  T
Q  100 a 100  Q
    |    
T  25407245 a 25407245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 35536705 - 35536625
Alignment:
Q  24 tccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 104  Q
    ||||||||| ||||||||| |||||| ||| ||||||||  | |||||| |||| ||||||||||||| ||||||||||||    
T  35536705 tccacatgaccacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcattactct 35536625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 24699952 - 24700055
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| |||||  || ||||| ||  |||||| ||||||||| ||| ||||||||  | |||||| ||| |||||||||||||| ||||||||    
T  24699952 agagaaagtgtgtttgtacagggtccacgtggccacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcatta 24700051  T
Q  101 ctct 104  Q
    ||||    
T  24700052 ctct 24700055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 8076495 - 8076393
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  |||||| |||||||||||| |||||||| || |||| | |||||||||| ||| ||| ||||||||    
T  8076495 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatcatta 8076396  T
Q  101 ctc 103  Q
    |||    
T  8076395 ctc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 41189762 - 41189868
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||  ||  ||||||||| |||||| ||| ||||||||  |||||||| |||||||||||||| ||| |||||| |    
T  41189762 agagaaagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcataa 41189861  T
Q  101 ctcttac 107  Q
    |||||||    
T  41189862 ctcttac 41189868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 51419391 - 51419460
Alignment:
Q  34 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    |||||||||||||||||||| ||||| || |||||||||  || |||||||||||||| |||||| ||||    
T  51419391 cacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataactc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 39670090 - 39670023
Alignment:
Q  24 tccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctat 91  Q
    ||||||||||||||||||| |||||| | ||| |||||| |||| |||| |||| |||||||||||||    
T  39670090 tccacatgatcacgtgtcaaatttttatatagatgtcaagggatatattgccacataaggatgtctat 39670023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 36707456 - 36707526
Alignment:
Q  35 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 105  Q
    ||||||||||||||||||| | |||||| || ||||||  ||||||||| | ||||| |||||||||||||    
T  36707456 acgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactctt 36707526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 21746213 - 21746284
Alignment:
Q  35 acgtgtcagatttttgtgtagg--tgtcaatggatgtattaccacctaaggatgtctatatatcattactct 104  Q
    ||||||||||||||||||| ||  |||| | | ||||||| |||||||||||||| ||| ||||||||||||    
T  21746213 acgtgtcagatttttgtgtgggggtgtccaggaatgtattgccacctaaggatgtatatgtatcattactct 21746284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 41080809 - 41080709
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    ||||||| |||| |||| |||| ||||||||| ||| | ||||||||||| || |||||||| || ||| || | || ||||||||||||| ||||||||    
T  41080809 agagaaaatgtgcttgtgtggg-tccacatgaccacatatcagatttttgcgtgggtgtcaaagggtgttttgctac-taaggatgtctatgtatcatta 41080712  T
Q  101 ctc 103  Q
    |||    
T  41080711 ctc 41080709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 35093687 - 35093583
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||||||  | ||||||| ||| ||||||||||||| || | ||||||  | ||||||  ||||||| | ||||||| |||| | |    
T  35093687 agagaaagtgtgcttgtatggagttcacatgaccacatgtcagatttttgcgtggatgtcaaatgttgtattgtcacctaaagttgtctatgtatcgtaa 35093588  T
Q  101 ctctt 105  Q
    |||||    
T  35093587 ctctt 35093583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 1179938 - 1180040
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  || ||||||||||  ||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||| ||||||||    
T  1179938 agagaaagtgtgcttgtgcggaatccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatta 1180037  T
Q  101 ctc 103  Q
    |||    
T  1180038 ctc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 5957932 - 5957831
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||||||||  ||||||||| |||  ||||||||||||||||||| |||||||| || |||||| ||||||||| |||||||| ||||||||    
T  5957932 agagaaagtgtgattgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcatta 5957833  T
Q  101 ct 102  Q
    ||    
T  5957832 ct 5957831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 42221617 - 42221513
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||||||| |||| ||||| ||||||||||||||||||| |||||| | | |||||||  ||||||||||||| ||| ||||||||    
T  42221617 agagaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatgtattgtcacctaaggatgtatatgtatcatta 42221518  T
Q  101 ctctt 105  Q
    |||||    
T  42221517 ctctt 42221513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 34012294 - 34012396
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||||||||| |||  |||||||| |||||||||| |||||||| || ||||||||||||||||| ||||||| ||||||||    
T  34012294 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatta 34012393  T
Q  101 ctc 103  Q
    |||    
T  34012394 ctc 34012396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 37038579 - 37038478
Alignment:
Q  3 agaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattact 102  Q
    |||||||||| ||||  ||||||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||| ||||||||| ||||||||||    
T  37038579 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattact 37038480  T
Q  103 ct 104  Q
    ||    
T  37038479 ct 37038478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 10621119 - 10621182
Alignment:
Q  35 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 98  Q
    ||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||    
T  10621119 acgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcat 10621182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 44507085 - 44507188
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    ||||||||| || ||||| ||| ||||| |||  ||||||||||||||||||| ||||| || |  ||||||||||||||||| ||||||| ||||||||    
T  44507085 agagaaagtatgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcatta 44507184  T
Q  101 ctct 104  Q
    ||||    
T  44507185 ctct 44507188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 12831149 - 12831047
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || ||||||  ||||||||| ||||||| ||||||||    
T  12831149 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcatta 12831050  T
Q  101 ctc 103  Q
    |||    
T  12831049 ctc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 15197435 - 15197333
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||  ||||||| ||||||||    
T  15197435 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcatta 15197336  T
Q  101 ctc 103  Q
    |||    
T  15197335 ctc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 40423941 - 40424043
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| |||||||||  ||||||||||||||||||| | |||||| || |||||| |||||||||| | ||||| ||||||||    
T  40423941 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcatta 40424040  T
Q  101 ctc 103  Q
    |||    
T  40424041 ctc 40424043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 4854900 - 4854973
Alignment:
Q  40 tcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactcttacttaata 113  Q
    |||||||||| ||||||||| || || |||||| |||||||||||||||||| |||||||||||||||| ||||    
T  4854900 tcagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcattactcttactaaata 4854973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 14548024 - 14547919
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| ||||||||  | |||||| |||||||||| ||||||| |||| |||    
T  14548024 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatcttta 14547925  T
Q  101 ctctta 106  Q
    ||||||    
T  14547924 ctctta 14547919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 504119 - 504221
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||| ||||| ||||  ||| ||||| |||  ||||||||||||||||||| ||||||||  | |||||| |||||||||| ||||||| ||||||||    
T  504119 agagaatgtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 504218  T
Q  101 ctc 103  Q
    |||    
T  504219 ctc 504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 43414579 - 43414681
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||||||||  ||| ||||||| |||||||||||| |||||||| || ||| || ||| |||||||||||||| |||||| |    
T  43414579 agagaaagtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcataa 43414678  T
Q  101 ctc 103  Q
    |||    
T  43414679 ctc 43414681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 24307692 - 24307627
Alignment:
Q  40 tcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 105  Q
    |||||||||||||| |||||||||||||||||| |||||||||| ||| ||| |||||| ||||||    
T  24307692 tcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactctt 24307627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 15048214 - 15048281
Alignment:
Q  35 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||||||||||| |||||| ||||    
T  15048214 acgtgtcagatttttgtgt-ggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 15048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 23122595 - 23122697
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| || |  ||| ||||| |||  ||||||||||||||||||| ||||||||  | |||||| |||| ||||| ||||||| ||||||||    
T  23122595 agagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcatta 23122694  T
Q  101 ctc 103  Q
    |||    
T  23122695 ctc 23122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 24307830 - 24307896
Alignment:
Q  40 tcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 106  Q
    |||||||||||||| |||||||| ||||||||| |||||||||| ||| ||| |||||| |||||||    
T  24307830 tcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataactctta 24307896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 20074965 - 20075034
Alignment:
Q  34 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    ||||||||| |||||| ||| |||||||| |  |||||| |||||||||||||||||| |||||||||||    
T  20074965 cacgtgtcacatttttatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactc 20075034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 16056399 - 16056503
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||  ||| |||| |||  ||| |||||||||||||||| |||||||| |||||||||  ||| ||||||||| ||| |||||| |    
T  16056399 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgtttatgtatcataa 16056498  T
Q  101 ctctt 105  Q
    |||||    
T  16056499 ctctt 16056503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 16383479 - 16383375
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||  ||| |||| |||  ||| |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| |    
T  16383479 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 16383380  T
Q  101 ctctt 105  Q
    |||||    
T  16383379 ctctt 16383375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 34307281 - 34307214
Alignment:
Q  38 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 105  Q
    |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| ||||||    
T  34307281 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 34307214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 10284629 - 10284733
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  |||||||| |||||||||| |||||||| |  ||||||  ||| ||||| ||||||| |||||| |    
T  10284629 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcataa 10284728  T
Q  101 ctctt 105  Q
    |||||    
T  10284729 ctctt 10284733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 32032826 - 32032724
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||   ||||||| |||  ||| |||||||||||||||| | |||||| ||||||||| |||||||||| ||| ||| |||||| |    
T  32032826 agagaaagtgtacttgtgcaggatccatatggccacatgtcagatttttgtgtggatgtcaa-ggatgtattgccacctaagggtgtttatgtatcataa 32032728  T
Q  101 ctct 104  Q
    ||||    
T  32032727 ctct 32032724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 8841430 - 8841512
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaagg 83  Q
    |||||||||||| ||||  ||| ||||| |||  |||||| |||||||||||| |||||||| || |||| | ||||||||||    
T  8841430 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagg 8841512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 30183873 - 30183975
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| || ||||   |||| ||||| |||| |||||||||||| |  ||||| | | ||||||| |||| ||||||||| ||| ||||||||    
T  30183873 agagaaagtgtgcttatatgaagtccatatgattacgtatcagatttttgtatgagtgtccaggaatgtattgccacgtaaggatgtatatgtatcatta 30183972  T
Q  101 ctc 103  Q
    |||    
T  30183973 ctc 30183975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42354586 - 42354634
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagattttt 49  Q
    |||||||||||| || | || ||||||||||| ||||||||||||||||    
T  42354586 agagaaagtgtgcttatgtgagatccacatgaacacgtgtcagattttt 42354634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 9058582 - 9058477
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| |||||||||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||||    
T  9058582 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 9058483  T
Q  101 ctctta 106  Q
    ||||||    
T  9058482 ctctta 9058477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 7465733 - 7465836
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| |||| |||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| ||| |||||| ||||||| ||||||||    
T  7465733 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcatta 7465832  T
Q  101 ctct 104  Q
    ||||    
T  7465833 ctct 7465836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 13438445 - 13438343
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| |||||||||  ||||||||| ||||||| ||||||||    
T  13438445 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcatta 13438346  T
Q  101 ctc 103  Q
    |||    
T  13438345 ctc 13438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 17473122 - 17473020
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||||||||| |||  ||||||||||||||||||| |||||||| || |||||| ||| |||||| ||||||| ||||||||    
T  17473122 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcatta 17473023  T
Q  101 ctc 103  Q
    |||    
T  17473022 ctc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 20700917 - 20700813
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| || |  ||| ||||| |||  |||||||||||||||||||||| ||||| || |||||| |||| ||||||||||||| ||||||||    
T  20700917 agagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatcatta 20700818  T
Q  101 ctctt 105  Q
    |||||    
T  20700817 ctctt 20700813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 30915565 - 30915461
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||| ||| ||||| |||  ||||||||||||||| ||| || ||||| || |||||| |||||||||| ||||||| ||||||||    
T  30915565 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcatta 30915466  T
Q  101 ctctt 105  Q
    |||||    
T  30915465 ctctt 30915461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 33436098 - 33436202
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  |||||| |||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||||    
T  33436098 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 33436197  T
Q  101 ctctt 105  Q
    |||||    
T  33436198 ctctt 33436202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 5574486 - 5574589
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||||||||| |||  ||||||||||||||| ||| |||||||| || |||||| |||||||||  ||||||| ||||||||    
T  5574486 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcatta 5574585  T
Q  101 ctct 104  Q
    ||||    
T  5574586 ctct 5574589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 19930818 - 19930917
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| |||||||||  ||||||||||||||||||| | |||||| || |||||| |||||||||| ||||||| ||||||||    
T  19930818 agagaaagtgtgtttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 19930917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 28863557 - 28863458
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||||    
T  28863557 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 28863458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 40613900 - 40614002
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||  ||  |||||||||||||||||||| |||||||| || |||||| |||||||||||||||||| |||||| |    
T  40613900 agagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 40613999  T
Q  101 ctc 103  Q
    |||    
T  40614000 ctc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 40701580 - 40701478
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||||||||  ||| ||||| | |  ||||||||||||||||||| ||||||||  | |||||| |||||||||| ||||||| ||||||||    
T  40701580 agagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 40701481  T
Q  101 ctc 103  Q
    |||    
T  40701480 ctc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 10249380 - 10249485
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| ||||||||  | ||||||  ||||||||| ||||||| ||||||||    
T  10249380 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcatta 10249479  T
Q  101 ctctta 106  Q
    ||||||    
T  10249480 ctctta 10249485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 33436290 - 33436210
Alignment:
Q  24 tccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 104  Q
    |||||||| ||||||||||||||||| ||| ||||||||  | |||||| ||| |||||||||||||| ||||||||||||    
T  33436290 tccacatggtcacgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcattactct 33436210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 27864806 - 27864704
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| || |  ||| ||||| |||| ||||||||||||||||||| | |||||| || |||||| |||| ||||| ||||||| ||||||||    
T  27864806 agagaaagtgtgcttttgcggggtccacgtgattacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatcatta 27864707  T
Q  101 ctc 103  Q
    |||    
T  27864706 ctc 27864704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 41575240 - 41575138
Alignment:
Q  1 agagaaagtgtgattgtat-gggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatt 99  Q
    |||||||||||| |||| | ||| ||||||||| ||| ||||| ||||||||||   |||||| || |||||||||| |||||||||||||| |||||||    
T  41575240 agagaaagtgtgcttgtgtaggggtccacatgaccacatgtcaaatttttgtgtgaatgtcaaagggtgtattaccatctaaggatgtctatgtatcatt 41575141  T
Q  100 act 102  Q
    |||    
T  41575140 act 41575138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 2533191 - 2533123
Alignment:
Q  35 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 104  Q
    ||||||||||||||||||| |||||||| ||||||||| |||| ||||||||||||| |||||| |||||    
T  2533191 acgtgtcagatttttgtgt-ggtgtcaaaggatgtattgccacttaaggatgtctatgtatcataactct 2533123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 32505648 - 32505749
Alignment:
Q  3 agaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattact 102  Q
    |||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| ||||||||  | ||||||  ||||||||| ||||||| ||||||||||    
T  32505648 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattact 32505747  T
Q  103 ct 104  Q
    ||    
T  32505748 ct 32505749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 42257295 - 42257191
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||  ||  |||||||||||||||| ||| ||||||||  |||||||| |||||||| ||||||||| |||||| |    
T  42257295 agagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcataa 42257196  T
Q  101 ctctt 105  Q
    |||||    
T  42257195 ctctt 42257191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 45097733 - 45097837
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||  ||| |||| |||  ||| |||||||||||||| | |||||||| ||||||||| |||||||||||||| ||| |||||| |    
T  45097733 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataa 45097832  T
Q  101 ctctt 105  Q
    |||||    
T  45097833 ctctt 45097837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 17823852 - 17823781
Alignment:
Q  35 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 106  Q
    ||||||||||||||||||| |||||  | | ||||||| |||||||||||||| ||| ||||||||||||||    
T  17823852 acgtgtcagatttttgtgtgggtgttcaggaatgtattgccacctaaggatgtatatgtatcattactctta 17823781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 28381687 - 28381755
Alignment:
Q  35 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    ||||||||||||||||||| |||||| |  | |||||| |||||||||| ||||||| |||||||||||    
T  28381687 acgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcattactc 28381755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 26891525 - 26891616
Alignment:
Q  24 tccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactcttacttaatata 115  Q
    ||||| ||| ||| |||||||||||||||| |||||| | || |||||| |||||||||| || |||| |||||| |||||| ||| |||||    
T  26891525 tccacgtgaccacatgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataactctttctttatata 26891616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 17820002 - 17820104
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    ||||||| |||| |||| |||| ||||| | | ||| |||||||||||||||| |||||||| || |||||| |||||||  | ||||||| |||||| |    
T  17820002 agagaaaatgtgtttgtgtggggtccacgtaaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctatagttgtctatgtatcataa 17820101  T
Q  101 ctc 103  Q
    |||    
T  17820102 ctc 17820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 38273174 - 38273244
Alignment:
Q  35 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 105  Q
    ||||||||||||||||||| ||||| || || |||||| ||| ||||| |||||||| |||||| ||||||    
T  38273174 acgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataactctt 38273244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 38732456 - 38732354
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||  ||| |||| |||| ||| |||||||||||||||| |||||||| |||||||||  ||| ||||| ||| ||| |||||| |    
T  38732456 agagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatcataa 38732357  T
Q  101 ctc 103  Q
    |||    
T  38732356 ctc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 38882846 - 38882915
Alignment:
Q  35 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 105  Q
    ||||||||||||||||||| | |||||| || | |||| |||||||||| ||||||| |||||||||||||    
T  38882846 acgtgtcagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgtctatgtatcattactctt 38882915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 4060753 - 4060685
Alignment:
Q  35 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    ||||||||||||||||||| | ||||||  | ||||||  ||||||||| ||||||| |||||||||||    
T  4060753 acgtgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 4060685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 2997485 - 2997567
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaagg 83  Q
    |||||||||||  ||||  ||| |||| |||  ||| |||||||||||||||| |||||||| || |||||| ||||||||||    
T  2997485 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagg 2997567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 36168905 - 36168835
Alignment:
Q  34 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 104  Q
    ||||||||| |||||||||| || || || |||||||||  || |||||||||||||| |||||| |||||    
T  36168905 cacgtgtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcataactct 36168835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 43490186 - 43490121
Alignment:
Q  38 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    |||||||||||||||| |||||||| || ||||||  ||||||||| ||| ||| |||||| ||||    
T  43490186 tgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactc 43490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 23128125 - 23128229
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| |||| |||||||||| |||  ||||||||||||||||||| |||||||| |||||||||| ||| ||| | ||||||||||||||||    
T  23128125 agagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattatcacataaaggtgtctatatatcatta 23128224  T
Q  101 ctctt 105  Q
     ||||    
T  23128225 ttctt 23128229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 31953028 - 31953130
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| |||| || | ||||||||| ||| |||||||||||| ||| |||||||| || |||||| |||||||||||||||||| ||||||||    
T  31953028 agagaaagtgtgtttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcatta 31953127  T
Q  101 ctc 103  Q
    |||    
T  31953128 ctc 31953130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 11427720 - 11427615
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccaccta--aggatgtctatatatcat 98  Q
    |||||||||||| ||||  ||||||||| |||  ||||||||||||||||||| |||||||| ||||||||| |||||||  ||| ||||||| ||||||    
T  11427720 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagagggtgtctatgtatcat 11427621  T
Q  99 tactct 104  Q
    ||||||    
T  11427620 tactct 11427615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 17598656 - 17598554
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| ||||||||  |||||||| |||||||||| ||||||| ||||||||    
T  17598656 agagaaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcatta 17598557  T
Q  101 ctc 103  Q
    |||    
T  17598556 ctc 17598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 28536486 - 28536582
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatt 99  Q
    |||||||||||| |||| |||| ||||||||| |  ||||||||||||||||| |||||||| || |||||| |||||||||||||| ||| |||||||    
T  28536486 agagaaagtgtgcttgtgtggggtccacatgacc--gtgtcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtatcatt 28536582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 32869780 - 32869678
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| |||| |||    
T  32869780 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcttta 32869681  T
Q  101 ctc 103  Q
    |||    
T  32869680 ctc 32869678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 12732584 - 12732480
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    ||||||| |||| || | ||||||||||||   |||||||||||||||||||| ||||||||||  | |||| |||| |||| |||||||| ||||||||    
T  12732584 agagaaaatgtgcttatgtgggatccacatagccacgtgtcagatttttgtgtgggtgtcaatgattatattgccacttaagaatgtctatgtatcatta 12732485  T
Q  101 ctctt 105  Q
    |||||    
T  12732484 ctctt 12732480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 22880656 - 22880755
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  |||||||||| |||||||| |||||||| || |||||| |||||||||| ||||||| ||||||||    
T  22880656 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 22880755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 946442 - 946377
Alignment:
Q  37 gtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattact 102  Q
    |||||||||||||| ||||||||||| || ||||||| ||||||||||||||||| |||| |||||    
T  946442 gtgtcagatttttgggtaggtgtcaaagggtgtattatcacctaaggatgtctatgtatcgttact 946377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 9379710 - 9379807
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 98  Q
    ||||||| |||| |||| || ||||||||||  ||||||||| |||||||| | |||||||| |||||||||  || |||||||||||||| ||||||    
T  9379710 agagaaaatgtgtttgtgtgagatccacatggccacgtgtcaaatttttgtatgggtgtcaagggatgtattgtcatctaaggatgtctatgtatcat 9379807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 31976350 - 31976247
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| | ||  ||| |||||||||||||||||||| ||||| || || | |||| |||||||||||||||||| |||||| |    
T  31976350 agagaaagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataa 31976251  T
Q  101 ctct 104  Q
    ||||    
T  31976250 ctct 31976247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 15990040 - 15990145
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||  ||| |||| |||  ||| |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| |    
T  15990040 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 15990139  T
Q  101 ctctta 106  Q
    ||||||    
T  15990140 ctctta 15990145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 30341358 - 30341462
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||  ||| |||| |||  ||| |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| |    
T  30341358 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 30341457  T
Q  101 ctctt 105  Q
    |||||    
T  30341458 ctctt 30341462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 31109432 - 31109500
Alignment:
Q  35 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    ||||||||||||||||||| | |||||| || |||||| |||||||||| |||||||  ||||||||||    
T  31109432 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctattaatcattactc 31109500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 31110793 - 31110861
Alignment:
Q  35 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 105  Q
    ||||||||||||||||||   ||||||| || |||||| |||||||||||||||||| |||||| ||||||    
T  31110793 acgtgtcagatttttgtga--gtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactctt 31110861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 15508022 - 15508124
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||  ||| |||| |||  ||| |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| |    
T  15508022 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 15508121  T
Q  101 ctc 103  Q
    |||    
T  15508122 ctc 15508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 6209463 - 6209567
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| | ||  ||| ||||| |||  ||||| |||||||||||||  |||||||    |||||| |||||||||| ||||||| ||||||||    
T  6209463 agagaaagtgtgctagtgcggggtccacgtgactacgtgacagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtatcatta 6209562  T
Q  101 ctctt 105  Q
    |||||    
T  6209563 ctctt 6209567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 15832659 - 15832575
Alignment:
Q  21 ggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 105  Q
    |||||||| |||  |||||||| |||||||||| ||||||||  ||| ||||  ||||||| | ||||||| |||||||||||||    
T  15832659 ggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaatgatttattgtcacctaaaggtgtctatgtatcattactctt 15832575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 4231650 - 4231564
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgt 87  Q
    |||||||||||  ||||  ||| |||| |||  |||||||||||||||||||| |||| ||| || |||||| |||||||| |||||    
T  4231650 agagaaagtgtacttgtgcggggtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaatgatgt 4231564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 22422053 - 22422119
Alignment:
Q  38 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 104  Q
    ||||||| |||||| |  |||||||  ||| |||| |||||||||||||||||| ||||||||||||    
T  22422053 tgtcagaattttgtatgagtgtcaagagatctattgccacctaaggatgtctatgtatcattactct 22422119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 29857929 - 29857827
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| || |  ||||||||| | |  ||||||||||||||||||| ||||| ||  | |||||| ||| |||| | ||||||| ||||||||    
T  29857929 agagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcatta 29857830  T
Q  101 ctc 103  Q
    |||    
T  29857829 ctc 29857827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 50052426 - 50052530
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||||||||||| ||||||||    
T  50052426 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatta 50052525  T
Q  101 ctctt 105  Q
    |||||    
T  50052526 ctctt 50052530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 480445 - 480549
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||| ||| ||||| |||  ||||||||||||||||||| |||||||| || ||||||  ||||||||| ||||||| ||||||||    
T  480445 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcatta 480544  T
Q  101 ctctt 105  Q
    |||||    
T  480545 ctctt 480549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 6034146 - 6034044
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||||||||| |||  || |||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||||    
T  6034146 agagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 6034047  T
Q  101 ctc 103  Q
    |||    
T  6034046 ctc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 48183047 - 48183152
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||| ||||| ||||||| ||||||||    
T  48183047 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcatta 48183146  T
Q  101 ctctta 106  Q
    ||||||    
T  48183147 ctctta 48183152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 42044365 - 42044469
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||  | ||||||||| |||||||||| ||||||| ||||||||    
T  42044365 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcatta 42044464  T
Q  101 ctctt 105  Q
    |||||    
T  42044465 ctctt 42044469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 50526191 - 50526271
Alignment:
Q  23 atccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    |||||| ||| |||||||||||||||||||| |||||||| || |||||| |||||||| ||||||||| |||||||||||    
T  50526191 atccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 50526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 40574846 - 40574779
Alignment:
Q  36 cgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    |||||||||||||||||| |||||||| || ||||||||||||||||||||||||| |||||| ||||    
T  40574846 cgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactc 40574779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 11511460 - 11511562
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||| ||| |||||||| || |||||| |||||||||| ||||||| ||||||||    
T  11511460 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 11511559  T
Q  101 ctc 103  Q
    |||    
T  11511560 ctc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 29547976 - 29548062
Alignment:
Q  20 gggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 106  Q
    |||||||| |||  ||| |||||||||||||||| |||||||| ||||||||| |||||||||||||| ||| |||||| |||||||    
T  29547976 gggatccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactctta 29548062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 29239988 - 29239884
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| |||| |||| ||||| |||  |||||| |||||||||||| | ||||||  | |||||| |||||||||| ||||||| ||||||||    
T  29239988 agagaaagtgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcatta 29239889  T
Q  101 ctctt 105  Q
    |||||    
T  29239888 ctctt 29239884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 29234243 - 29234346
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  |||||||||||||||||| |||| |||| || |||||| ||| |||||| ||||||| ||||||||    
T  29234243 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgaaggtatcaaagggtgtattgccatctaagggtgtctatgtatcatta 29234342  T
Q  101 ctct 104  Q
    ||||    
T  29234343 ctct 29234346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 3481756 - 3481654
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| |||| |||| ||||| |||  | ||||||||||||||||| |||||||| |  |||||| |||||||| | ||||||| ||||||||    
T  3481756 agagaaagtgtgcttgtgtggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcatta 3481657  T
Q  101 ctc 103  Q
    |||    
T  3481656 ctc 3481654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 41236449 - 41236347
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| | ||||||  | |||||| |||||||||| ||||||| ||||||||    
T  41236449 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 41236350  T
Q  101 ctc 103  Q
    |||    
T  41236349 ctc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 8343198 - 8343263
Alignment:
Q  38 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||||||| ||| |||||| ||||    
T  8343198 tgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcataactc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 23608337 - 23608232
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| |||| |||  | ||| |||  ||||||||||||||||||| ||||||||  | ||||||  || |||||| ||||||||||||||||    
T  23608337 agagaaagtgtgcttgtgtggagttcacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgtcatctaagggtgtctatatatcatta 23608238  T
Q  101 ctctta 106  Q
    ||||||    
T  23608237 ctctta 23608232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 29977987 - 29977882
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| |||| |||| |||| ||||  ||||||||||||||||||| ||||| || || |||||| ||||||| || | | ||| ||||||||    
T  29977987 agagaaagtgtgcttgtgtggggtccatatgactacgtgtcagatttttgtgtgggtgttaaggggtgtattgccacctatggttctgtatgtatcatta 29977888  T
Q  101 ctctta 106  Q
    ||||||    
T  29977887 ctctta 29977882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 55475256 - 55475188
Alignment:
Q  38 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 106  Q
    |||||||||||||||| |||||||| || |||||| |||||||||||||| ||| |||||| |||||||    
T  55475256 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactctta 55475188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 24995105 - 24995209
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    ||||||| |||| ||||  ||| ||||| |||  |||||||| |||||| ||| |||||||| || |||||| ||| |||||| |||| |||||||||||    
T  24995105 agagaaaatgtgcttgtgcggggtccacgtgactacgtgtcaaatttttatgtgggtgtcaaagggtgtattgccatctaagggtgtccatatatcatta 24995204  T
Q  101 ctctt 105  Q
    |||||    
T  24995205 ctctt 24995209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 47986310 - 47986207
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||  ||| |||| |||  ||| |||||||||||||||| | |||||| ||||||||| |||||||||| ||| ||| |||||| |    
T  47986310 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcataa 47986211  T
Q  101 ctct 104  Q
    ||||    
T  47986210 ctct 47986207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 50813890 - 50813993
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||  ||| | || |||| ||| |||||||||||||||| |||||||| || ||||||||||||||||  ||| ||| |||||| |    
T  50813890 agagaaagtgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcataa 50813989  T
Q  101 ctct 104  Q
    ||||    
T  50813990 ctct 50813993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 31910258 - 31910192
Alignment:
Q  37 gtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    ||||||||||||||||| |||||||| |  ||||||  ||||||||||||||||| |||||| ||||    
T  31910258 gtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataactc 31910192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 54473535 - 54473633
Alignment:
Q  5 aaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    |||||||| ||||  ||| ||||| |||  |||||| |||||||||||| ||||||||  | ||||||  ||||||||| ||||||| |||||||||||    
T  54473535 aaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactc 54473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 47104646 - 47104541
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| |||| |||| || | |  | ||||||||| |||||||||| |||||||  |  ||||||  || ||||| |||||||||||||||||    
T  47104646 agagaaagtgtgtttgtgtggggtcaataaaaccacgtgtcaaatttttgtgtgggtgtcagagagtgtattgtcatctaagaatgtctatatatcatta 47104547  T
Q  101 ctctta 106  Q
    ||||||    
T  47104546 ctctta 47104541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 19670714 - 19670818
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||  ||| |||| |||  ||| ||||||||||||||||  ||||||| || |||||| |||||||||| ||| ||| |||||| |    
T  19670714 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 19670813  T
Q  101 ctctt 105  Q
    |||||    
T  19670814 ctctt 19670818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 53352598 - 53352660
Alignment:
Q  35 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 98  Q
    ||||||||||||||||||||||||| || | |||||||  ||||||||| ||||||| ||||||    
T  53352598 acgtgtcagatttttgtgtaggtgttaaagaatgtatt-gcacctaagggtgtctatgtatcat 53352660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 17983741 - 17983823
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaagg 83  Q
    |||||||||||  ||||  ||| |||| |||  ||| |||||||||||||||| |||||||| || |||||| ||||||||||    
T  17983741 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagg 17983823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 27564733 - 27564835
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||| ||||||||||||||||||| ||||||||  | |||||| |||||||||||||||||| ||||||||    
T  27564733 agagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcatta 27564832  T
Q  101 ctc 103  Q
    |||    
T  27564833 ctc 27564835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 47452318 - 47452420
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||||||||| |||  |||||| |||||||||||| |||||||| || ||||||||||||||||| ||||||| ||||||||    
T  47452318 agagaaagtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatta 47452417  T
Q  101 ctc 103  Q
    |||    
T  47452418 ctc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 51898683 - 51898784
Alignment:
Q  3 agaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattact 102  Q
    |||||||||| ||||  ||||||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||| ||||||||| ||||||||||    
T  51898683 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattact 51898782  T
Q  103 ct 104  Q
    ||    
T  51898783 ct 51898784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 2582015 - 2581913
Alignment:
Q  3 agaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattact 102  Q
    |||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||||||    
T  2582015 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattact 2581916  T
Q  103 ctt 105  Q
    |||    
T  2581915 ctt 2581913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 3000421 - 3000319
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||| ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| ||||||||    
T  3000421 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcatta 3000322  T
Q  101 ctc 103  Q
    |||    
T  3000321 ctc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 9474874 - 9474976
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||||    
T  9474874 agagaaagtgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 9474973  T
Q  101 ctc 103  Q
    |||    
T  9474974 ctc 9474976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 3302533 - 3302633
Alignment:
Q  3 agaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattact 102  Q
    |||||||||| ||||||||| |||| ||||| ||||||||||||||||||| |||||| | | || ||||  ||||||||||||| ||| ||||||||||    
T  3302533 agaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatatattgtcacctaaggatgtatatgtatcattact 3302632  T
Q  103 c 103  Q
    |    
T  3302633 c 3302633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 32813349 - 32813245
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||  ||| |||||||||||||||||||| ||||| || || |||||| |||||||||||||||||| |||||| |    
T  32813349 agagaaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 32813250  T
Q  101 ctctt 105  Q
    |||||    
T  32813249 ctctt 32813245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 38595256 - 38595152
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||| ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||| | ||| ||| ||||||||    
T  38595256 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcatta 38595157  T
Q  101 ctctt 105  Q
    |||||    
T  38595156 ctctt 38595152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 37649297 - 37649198
Alignment:
Q  4 gaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    ||||||||| ||||  || || ||| ||| |||||||||||||||||||| |||||||| |  |||||| |||||||| ||||||||| |||||||||||    
T  37649297 gaaagtgtgcttgtgcggaattcacgtgaccacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactc 37649198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 50630560 - 50630457
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||  ||| ||||||||| |||||||||| | ||||| ||||||||    
T  50630560 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgtatcatta 50630461  T
Q  101 ctct 104  Q
    ||||    
T  50630460 ctct 50630457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 44548374 - 44548473
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||| |||  ||||||||||||||||||| ||| ||||  | |||||| |||||||| ||||||||| ||||||||    
T  44548374 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtatcatta 44548473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 43234 - 43132
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||  ||||| |||  ||||||||||||||||||| |||||||| |||||||||  | ||||||  ||||||| ||||||||    
T  43234 agagaaagtgtgcttgtgcggagtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtatcatta 43135  T
Q  101 ctc 103  Q
    |||    
T  43134 ctc 43132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 41608491 - 41608593
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||| ||| |||| |||  ||| ||||||||||||||||  ||||||| || |||||| |||||||||||||| ||| |||||| |    
T  41608491 agagaaagtgtacttgtacggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcataa 41608590  T
Q  101 ctc 103  Q
    |||    
T  41608591 ctc 41608593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 48716284 - 48716382
Alignment:
Q  5 aaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 103  Q
    |||||||| ||||  ||| ||||| |||  ||||||||||||||||||| | ||||||  | |||||| |||||||||| ||||||| |||||||||||    
T  48716284 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 48716382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 8346386 - 8346490
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||   || ||||| |||  ||||||||||||||||||| ||||||||  | |||||| |||||||| | || |||| ||||||||    
T  8346386 agagaaagtgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcatta 8346485  T
Q  101 ctctt 105  Q
    |||||    
T  8346486 ctctt 8346490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 38632323 - 38632423
Alignment:
Q  5 aaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 104  Q
    |||||||| ||||  ||| ||||| |||  ||||||||||||||||||| | ||| ||  | |||||| |||||||||| ||||||| ||||||||||||    
T  38632323 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcattactct 38632422  T
Q  105 t 105  Q
    |    
T  38632423 t 38632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 23597122 - 23597193
Alignment:
Q  34 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 105  Q
    |||||||||||||||| ||| ||| |||| |  |||||| |||||||| ||||||||| |||||||||||||    
T  23597122 cacgtgtcagatttttatgtgggtatcaaagagtgtattgccacctaatgatgtctatgtatcattactctt 23597193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37926436 - 37926539
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||| ||||||||  ||  |||||||||||||||| ||| ||||| ||  |||||||| |||||||| ||| ||||| |||||| |    
T  37926436 agagaaagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataa 37926535  T
Q  101 ctct 104  Q
    ||||    
T  37926536 ctct 37926539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 49811559 - 49811630
Alignment:
Q  35 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 106  Q
    ||||||||||||||||||| | ||||||  | ||||||  ||||||||||||||||| |||||| |||||||    
T  49811559 acgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataactctta 49811630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 7740802 - 7740732
Alignment:
Q  34 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 104  Q
    ||||||||| |||||| ||||||||||||||||||||||  ||| ||||| |||| || |||||| |||||    
T  7740802 cacgtgtcatatttttatgtaggtgtcaatggatgtattgtcacataaggttgtcaatgtatcataactct 7740732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 50590998 - 50591100
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||  ||| |||| |||  ||| |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| |    
T  50590998 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 50591097  T
Q  101 ctc 103  Q
    |||    
T  50591098 ctc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 44454077 - 44453984
Alignment:
Q  5 aaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 98  Q
    |||||||| |||| |||||||||| | | ||| |||||||||||||||| ||| ||||  |||||||| |||| ||| | ||||||| ||||||    
T  44454077 aaagtgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtgtgggtatcaagagatgtattgccacttaaaggtgtctatgtatcat 44453984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 5958998 - 5959102
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||  ||||  ||| |||| |||| ||| |||||||||||||||| ||||||||  | |||||| |||| ||||| ||| ||| |||||| |    
T  5958998 agagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcataa 5959097  T
Q  101 ctctt 105  Q
    |||||    
T  5959098 ctctt 5959102  T

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Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 26440836 - 26440741
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatc 96  Q
    |||||||||||| || |  ||||||||  ||  |||||||||||||||||||| ||||| || || ||||||  || |||||||||||||| ||||    
T  26440836 agagaaagtgtgcttatgcgggatccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatctatc 26440741  T

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Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 41758907 - 41758804
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||| ||||  |||  ||||||||||||||||||| | |||||| || |||||| |||  ||| | ||||||| ||||||||    
T  41758907 agagaaagtgtgtttgtgcggggtccatgtgactacgtgtcagatttttgtgtggttgtcaaagggtgtattgccatttaatggtgtctatgtatcatta 41758808  T
Q  101 ctct 104  Q
    ||||    
T  41758807 ctct 41758804  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 26274498 - 26274429
Alignment:
Q  37 gtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 106  Q
    ||||||||||||| ||| | ||||||  |||||||| |||| ||||| ||||||| |||||||| |||||    
T  26274498 gtgtcagatttttctgtggatgtcaaatgatgtattgccacataagggtgtctatgtatcattattctta 26274429  T

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Target: scaffold0321 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 10107 - 10211
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||| | | ||||| |||  ||||||||||||||| ||| | |||||| ||||||||| |||||||| | ||||||| |||||| |    
T  10107 agagaaagtgtgcttgtacgcggtccacgtgactacgtgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcataa 10206  T
Q  101 ctctt 105  Q
    |||||    
T  10207 ctctt 10211  T

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Target: scaffold1268 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 927 - 1029
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||||| ||| |||  ||||||||| ||||||||| | ||| || || |||||| |||||||| ||||||||| ||||||||    
T  927 agagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcatta 1026  T
Q  101 ctc 103  Q
    |||    
T  1027 ctc 1029  T

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Target: scaffold1267 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 927 - 1029
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| ||||  ||||| ||| |||  ||||||||| ||||||||| | ||| || || |||||| |||||||| ||||||||| ||||||||    
T  927 agagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcatta 1026  T
Q  101 ctc 103  Q
    |||    
T  1027 ctc 1029  T

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Target: scaffold0018 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 152600 - 152518
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaagg 83  Q
    |||||||||||  ||||  |||||||| |||| ||| |||||||||||||||| |||||||| || |||||| ||||| ||||    
T  152600 agagaaagtgtatttgtgcgggatccatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacccaagg 152518  T

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Target: scaffold0237 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 4131 - 4029
Alignment:
Q  1 agagaaagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatta 100  Q
    |||||||||||| || |  ||||||||| | |  ||||||||||||||||||| ||||| ||  | |||||| ||| |||| | ||||||| ||||||||    
T  4131 agagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcatta 4032  T
Q  101 ctc 103  Q
    |||    
T  4031 ctc 4029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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