View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7980_high_2 (Length: 502)
Name: NF7980_high_2
Description: NF7980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7980_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 14 - 466
Target Start/End: Original strand, 388283 - 388732
Alignment:
| Q |
14 |
aaaacaacatttttgatacagtaaagaagctggaggcagagcttgagaaaacgaaaaccgagctgaagatgttgaaggaaagagggagtgaaactgaggt |
113 |
Q |
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| T |
388283 |
aaaacaacatttttgatacaataaagaagctggaggcagagcttgagaaaacgaaaaccgagctgaagatgttgaaggaaagagggagtgaaactgaggt |
388382 |
T |
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| Q |
114 |
agcattggcaacactgaacgctgagcttcacaagaacatgtccaagttggctcaagcagaggctgcagcagctggaaaagcagctgcaaagactgtgagg |
213 |
Q |
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| T |
388383 |
agcattggcaacaatgaacgctgagcttcacaagaacatgtccaagttggctcaagcagaggctgcagcagctggaaaagcagctgcaaagactgtgagg |
388482 |
T |
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| Q |
214 |
tttgagaatattagtgatggaagtgaaaaaatgatgagaaattcacaaacactagctcatataattagtcttggagaaaacgatcatatttttgttggag |
313 |
Q |
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| T |
388483 |
tttgagaatattagtgatggaagtgaaaaaatgatgagaaattcacaaacactagctcatataattagtcttggagaaaacgatcatattt---ttggag |
388579 |
T |
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| Q |
314 |
gagggaaaaagagacataataataagatcacaaagcagaagccaatcatccctcttttgagtgatttctttttcaagagaaagaattctactaatcatca |
413 |
Q |
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| T |
388580 |
gagggaaaaagagacataataataagagcacaaagcagaagccaatcatccctcttttgagtgatttctttttcaagagaaagaattctactaatcatca |
388679 |
T |
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| Q |
414 |
taataatcctctttatgcttctcctttttaattaatgtatctatgtttcattg |
466 |
Q |
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| T |
388680 |
taataatcctctttatgcttctcctttttaattaatgtatctatgtttcattg |
388732 |
T |
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