View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7980_high_6 (Length: 364)
Name: NF7980_high_6
Description: NF7980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7980_high_6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 133 - 364
Target Start/End: Original strand, 37036163 - 37036383
Alignment:
| Q |
133 |
taatattaagtaaaggagttggatcttcttcannnnnnnctctccaatactatagtttttaaacacacatcaaatgtcactttattacatttatattcct |
232 |
Q |
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| T |
37036163 |
taatattaagtaaaggagttggatcttc---atttttttctctccaatactatagtttttaaacacacatcaaatgtcactttattacatttatattcct |
37036259 |
T |
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| Q |
233 |
taaactttggtaatgcaaaaaattgagggtaaaaaattggaaggatcttgatccggggtaaagacatcttaagtgatgaaaagaccaaaaacaccatgat |
332 |
Q |
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| T |
37036260 |
taaactttggtaatgcaaaaaattgagggtaaaaaattggaaggat--------ggggtaaagacatcttaagtgatgaaaagaccaaaaacaccatgat |
37036351 |
T |
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| Q |
333 |
gacagtgtaaatgttgggggatgtaggaaact |
364 |
Q |
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| T |
37036352 |
gacagtgtaaatgttgggggatgtaggaaact |
37036383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 37036061 - 37036158
Alignment:
| Q |
4 |
tttggtgttccataaatatgcggcaccatttttgtagtttctattttcgtcctttccttgcggcttgtggggttggcgctaataaattttgacaattc |
101 |
Q |
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| T |
37036061 |
tttggtgttccgtatatatgcggcaccatttttgtagtttctgttttcgtcctttccttgcggcttgcggggttggcgctaataaattttgacgattc |
37036158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 3013092 - 3013003
Alignment:
| Q |
4 |
tttggtgttccataaatatgcggcaccatttttgtagtttctattttcgtcctttccttgcggcttgtggggttggcgctaataaattttg |
94 |
Q |
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| T |
3013092 |
tttggtgttccgtatatatgcggcaccatttttgtagtttcagttttcgt-ctttccttgcggcttgcggggttggcactaataaattttg |
3013003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 29903466 - 29903510
Alignment:
| Q |
50 |
tcgtcctttccttgcggcttgtggggttggcgctaataaattttg |
94 |
Q |
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| T |
29903466 |
tcgtccattccttgcgccttgcggggttggcgctaataaattttg |
29903510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 19648178 - 19648227
Alignment:
| Q |
204 |
aaatgtcactttattacatttatattccttaaactttggtaatgcaaaaa |
253 |
Q |
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| T |
19648178 |
aaatgtcacattattacatttatattcccaaaactttgataatggaaaaa |
19648227 |
T |
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