View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7980_high_7 (Length: 321)
Name: NF7980_high_7
Description: NF7980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7980_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 44 - 304
Target Start/End: Original strand, 39273159 - 39273419
Alignment:
| Q |
44 |
atattttgtcgctgaatttgtatctagtagcgataatagtcctgaatgtagagaaattccaaaatagtcgcccgataggtcacagttactgtcatatcag |
143 |
Q |
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| T |
39273159 |
atattttgtcgctgaatttgtatctagtagcgataatagtcctgaatgtatagaaattccaaaatagtcgcccgataggtcacagttactgtcatatcag |
39273258 |
T |
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| Q |
144 |
tcgtataagtacttattacttatttactttcatatcaatccctgtaataaaaaagttattgtcaacattgaggactgtatcaatgtcaatgactatttgg |
243 |
Q |
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| T |
39273259 |
tcgtataagtacttattacttatttactttcatatcaatccctataataaaaaagttattgtcaacattgaggactgtatcaatgtcaatgactatttgg |
39273358 |
T |
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| Q |
244 |
attaatgaagtgcggaaccagggaccattttgaaatttcaatacatttagggactattgtg |
304 |
Q |
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| T |
39273359 |
attaatgaagtgcggaaccagggaccattttgaaatttcaatacatttagggactattgtg |
39273419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 21602165 - 21602237
Alignment:
| Q |
225 |
aatgtcaatgactatttggattaatgaagtgcggaaccagggaccattttgaaatttcaatacatttagggac |
297 |
Q |
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| T |
21602165 |
aatgtcagggactattttgattaatgaagtgcgcaatcggggactattttgaaatttcgatatattgagggac |
21602237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 6048845 - 6048812
Alignment:
| Q |
270 |
attttgaaatttcaatacatttagggactattgt |
303 |
Q |
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| T |
6048845 |
attttgaaatttcaatacatttaaggactattgt |
6048812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 304
Target Start/End: Original strand, 6217632 - 6217711
Alignment:
| Q |
225 |
aatgtcaatgactatttggattaatgaagtgcggaaccagggaccattttgaaatttcaatacatttagggactattgtg |
304 |
Q |
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| T |
6217632 |
aatgtcaaagactattttgactaacgaagtgcataatcatggactattttgaaattttgatacattgagggactattgtg |
6217711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 46720048 - 46720086
Alignment:
| Q |
267 |
accattttgaaatttcaatacatttagggactattgtga |
305 |
Q |
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| T |
46720048 |
accattttaaaatttcaatacattgagggactattgtga |
46720086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 48047958 - 48047877
Alignment:
| Q |
173 |
tcatatcaatccctgtaataaaaaagttattgtcaacattga-ggactgtatcaatgtcaatgactatttggattaatgaag |
253 |
Q |
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| T |
48047958 |
tcatatcaatccctatatgaaaagagttattgtcaacattgagggactattttaacgtcatggactattttgattaatgaag |
48047877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 17381543 - 17381619
Alignment:
| Q |
229 |
tcaatgactatttggattaatgaagtgcggaaccagggaccattttgaaatttcaatacatttagggactattgtga |
305 |
Q |
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| T |
17381543 |
tcaaggactattttgattaacaaagtgcacaatcagggactattttggaattttgatacattgagggactattgtga |
17381619 |
T |
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