View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7980_low_1 (Length: 637)
Name: NF7980_low_1
Description: NF7980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7980_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 281 - 624
Target Start/End: Original strand, 11330045 - 11330384
Alignment:
| Q |
281 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttcccccttgaattac |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11330045 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttctcccttgaattac |
11330144 |
T |
|
| Q |
381 |
cataattaaacctatttttctctcgctcaaccctattacgttgttctcttctggaacctctatccttttctgtatccccagaagccctcttgggatgatc |
480 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11330145 |
cataattaaacctatttttctctcgctcaaccctactacgtt---ctcttctggaacctctatccttttttgtatccccagaagccctcttgggatgatc |
11330241 |
T |
|
| Q |
481 |
cctgtctcttcttcgatgcttcttctcactcttcttcctatgctccctcacaggggattcacctttgtcgtttctatcatcataccgtgatttagaccac |
580 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
11330242 |
cctgtctcttcttcgattctccttctcactcttcttcctatgctccctcacaggggattcacctttgttgtttctatcatcataccgtgattcagaccac |
11330341 |
T |
|
| Q |
581 |
tccatatccatcaacaaacctggaagttcttgatgtttctgatg |
624 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11330342 |
tccatatccatcaacaaacctggaagttctt-atgtttctgatg |
11330384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 281 - 624
Target Start/End: Original strand, 11488066 - 11488405
Alignment:
| Q |
281 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttcccccttgaattac |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11488066 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttctcccttgaattac |
11488165 |
T |
|
| Q |
381 |
cataattaaacctatttttctctcgctcaaccctattacgttgttctcttctggaacctctatccttttctgtatccccagaagccctcttgggatgatc |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
11488166 |
cataattaaacctatttttctctcgctcaaccctactacgtt---ctcttctggaacctctatccttttttgtatccccagaagccctcttgggatgatc |
11488262 |
T |
|
| Q |
481 |
cctgtctcttcttcgatgcttcttctcactcttcttcctatgctccctcacaggggattcacctttgtcgtttctatcatcataccgtgatttagaccac |
580 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
11488263 |
cctgtctcttcttcgattctccttctcactcttcttcctatgctccctcacaggggattcacctttgttgtttctatcatcataccgtgattcagaccac |
11488362 |
T |
|
| Q |
581 |
tccatatccatcaacaaacctggaagttcttgatgtttctgatg |
624 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11488363 |
tccatatccatcaacaaacctggaagttctt-atgtttctgatg |
11488405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 11329765 - 11329978
Alignment:
| Q |
1 |
caagctatgttcttttgatgacaagtatgctgatgtttcaccatcttcatcatcttgattgggttttgaagccttagcatgcttgccaacatcagcatct |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
11329765 |
caagctatgttcttttgatgacaagtatgctgatgtttcaccatcttcatcatcttgattgagtattgaagccttagcatgcttgccaacatcatcatct |
11329864 |
T |
|
| Q |
101 |
ctcttttcatggtagtttaatttatcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11329865 |
ctcttttcatggtagtttaatttatcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctcat |
11329964 |
T |
|
| Q |
201 |
gctcatccctatta |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
11329965 |
gctcatccctatta |
11329978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 11487786 - 11487999
Alignment:
| Q |
1 |
caagctatgttcttttgatgacaagtatgctgatgtttcaccatcttcatcatcttgattgggttttgaagccttagcatgcttgccaacatcagcatct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
11487786 |
caagctatgttcttttgatgacaagtatgctgatgtttcaccatcttcatcatcttgattgagtattgaagccttagcatgcttgccaacatcatcatct |
11487885 |
T |
|
| Q |
101 |
ctcttttcatggtagtttaatttatcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctcat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11487886 |
ctcttttcatggtagtttaatttatcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctcat |
11487985 |
T |
|
| Q |
201 |
gctcatccctatta |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
11487986 |
gctcatccctatta |
11487999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 37380799 - 37380988
Alignment:
| Q |
9 |
gttcttttgatgacaagtatgctgatgtttcaccatcttcatcatcttgattgggttttgaagccttagcatgcttgccaacatcagcatctctcttttc |
108 |
Q |
| |
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|||||||||||||||||| |||||| || || || |||| ||||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||||| |
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| T |
37380799 |
gttcttttgatgacaagtttgctgaagtctccccctctttatcatcttgattgagttttgaagccttttcatgcttaccaacatcctcatctctcttttc |
37380898 |
T |
|
| Q |
109 |
atggtagtttaatttatcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctc |
198 |
Q |
| |
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|||||| | || | |||||||||||||| ||||| |||||||||| ||||||| | ||||||||||| | |||||||| ||||| |
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| T |
37380899 |
atggtaatctactctatcatcaagattacctgattcataatcttcctcgtgagccttcctacttcctctatccctcgacctatctttctc |
37380988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 521
Target Start/End: Original strand, 37381233 - 37381413
Alignment:
| Q |
338 |
tccctatgtttctctctatcataatctttcccccttgaattaccataattaaacctatttttctctcgctcaaccctattacgttgttctcttctggaac |
437 |
Q |
| |
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||||||| |||||||||||||||||| ||| |||| | || |||| ||| ||||| ||||| |||||| ||||||||| |||| |||| |||| |
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| T |
37381233 |
tccctatatttctctctatcataatccttctccctcgccttcccatctttactcctatccttctcccgctcatccctattac---gttcccttccagaac |
37381329 |
T |
|
| Q |
438 |
ctctatccttttctgtatccccagaagccctcttgggatgatccctgtctcttcttcgatgcttcttctcactcttcttcctat |
521 |
Q |
| |
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|||| ||||| || |||| ||||| ||||||||| ||||||| |||| | || || || | ||| |||||||||||||||| |
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| T |
37381330 |
ctctctccttctccacatcctcagaaaccctcttggcctgatcccggtctttactccggtgatccttatcactcttcttcctat |
37381413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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