View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7980_low_11 (Length: 277)
Name: NF7980_low_11
Description: NF7980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7980_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 36 - 258
Target Start/End: Original strand, 42203550 - 42203772
Alignment:
| Q |
36 |
agaagcaagggagttacagaacnnnnnnntctggatccagtctttcagattgtgacagaactgctatcaaagctttattggttaagctaacacgtaatga |
135 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42203550 |
agaagcaagggagttacagaacaaaaaaatctggatccagtctttcagattgtgacagaactgctatcaaagctttattggttaagctaacacgtaatga |
42203649 |
T |
|
| Q |
136 |
tattgagcagcaaagggtggctgatgatgagctccggttgctagctggctaagaggaatgcagatcgagtatgtattgtcaaggcaggagcaataccgct |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42203650 |
tattgagcagcaaagggtggctgatgatgagctccggttgctagctggctaagaggaatgcagatcgagtatgtattgtcaaggcaggagcaataccgct |
42203749 |
T |
|
| Q |
236 |
tctcgtagacttgttgtcttcca |
258 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
42203750 |
tctcgtagacttgttgtcttcca |
42203772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 36 - 258
Target Start/End: Original strand, 42212418 - 42212640
Alignment:
| Q |
36 |
agaagcaagggagttacagaacnnnnnnntctggatccagtctttcagattgtgacagaactgctatcaaagctttattggttaagctaacacgtaatga |
135 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42212418 |
agaagcaagggagttacagaacaaaaaaatctggatccagtctttcagattgtgacagaactgctatcaaagctttattggttaagctaacacgtaatga |
42212517 |
T |
|
| Q |
136 |
tattgagcagcaaagggtggctgatgatgagctccggttgctagctggctaagaggaatgcagatcgagtatgtattgtcaaggcaggagcaataccgct |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42212518 |
tattgagcagcaaagggtggctgatgatgagctccggttgctagctggctaagaggaatgcagatcgagtatgtattgtcaaggcaggagcaataccgct |
42212617 |
T |
|
| Q |
236 |
tctcgtagacttgttgtcttcca |
258 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
42212618 |
tctcgtagacttgttgtcttcca |
42212640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 36 - 258
Target Start/End: Complemental strand, 42420829 - 42420608
Alignment:
| Q |
36 |
agaagcaagggagttacagaacnnnnnnntctggatccagtctttcagattgtgacagaactgctatcaaagctttattggttaagctaacacgtaatga |
135 |
Q |
| |
|
||||||||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
42420829 |
agaagcaagggagttgcagaacaaagaaatctggaaccagtctttcagattgtgacaaaactgctatcaaagctttattggataagctaacaagtaatga |
42420730 |
T |
|
| Q |
136 |
tattgagcagcaaagggtggctgatgatgagctccggttgctagctggctaagaggaatgcagat---cgagtatgtattgtcaaggcaggagcaatacc |
232 |
Q |
| |
|
|||||| |||||||||| ||||| || |||||||||||| |||||| ||||||||||||||| ||||||||||| | | | |||||||||||||| |
|
|
| T |
42420729 |
tattgaacagcaaagggcggctgctggtgagctccggtt----gctggccaagaggaatgcagataaccgagtatgtatagccgaagcaggagcaatacc |
42420634 |
T |
|
| Q |
233 |
gcttctcgtagacttgttgtcttcca |
258 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
42420633 |
gcttctcgtagacttgttgtcttcca |
42420608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 258
Target Start/End: Complemental strand, 42408966 - 42408785
Alignment:
| Q |
76 |
tctttcagattgtgacagaactgctatcaaagctttattggttaagctaacacgtaatgatattgagcagcaaagggtggctgatgatgagctccggttg |
175 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| ||||||| ||||| |||| |||||| |||||| ||||||| || |||| || |||||||||||| |
|
|
| T |
42408966 |
tctttcagattgcgacagaaccgctatcaaagcattattggataagcaaacaagtaatggtattgaacagcaaatgggcgctgctggtgagctccggtt- |
42408868 |
T |
|
| Q |
176 |
ctagctggctaagaggaatgcagat---cgagtatgtattgtcaaggcaggagcaataccgcttctcgtagacttgttgtcttcca |
258 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||||||| | | ||||||||||||||||||| ||||| ||||||| |||| |
|
|
| T |
42408867 |
---gctggccaagaggaatgcagataaccaagtatgtattgccgaatcaggagcaataccgcttcttgtagagctgttgtcctcca |
42408785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 42218340 - 42218443
Alignment:
| Q |
92 |
agaactgctatcaaagctttattggttaagctaacacgtaatgatattgagcagcaaagggtggctgatgatgagctccggttgctagctggctaagagg |
191 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||| || |||||| ||||| || ||||||| |||| |||||| |||||| |
|
|
| T |
42218340 |
agaactgctatcaaagctttattggataagctaacaagtaatgatattgaacaaaaaagggcggctgctg-tgagctctggtt----gctggccaagagg |
42218434 |
T |
|
| Q |
192 |
aatgcagat |
200 |
Q |
| |
|
||||||||| |
|
|
| T |
42218435 |
aatgcagat |
42218443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University