View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7980_low_13 (Length: 250)
Name: NF7980_low_13
Description: NF7980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7980_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 2884787 - 2885013
Alignment:
| Q |
2 |
gaactattaaaggctaacttttcaagagagtatttgcttatgaaaagaaattcctttgtttacatcttcaagatatgtcaggtaaatttctagtttcttt |
101 |
Q |
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| T |
2884787 |
gaactgttaaaggctaacttctcaagagagtatttgcttatgaaaagaaattcctttgtttacatcttcaagatatgtcaggtaaatttctagtttcttt |
2884886 |
T |
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| Q |
102 |
acatgaatacatattttgattgtctgaatattttgcagacatgattttaacttttcattattcttccaatcttttttagcttctacttatggcaacaatt |
201 |
Q |
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| T |
2884887 |
acatgaatatatattttgattgtctgaatattttgcagacatgattttaacttttgattattcttcctatgttttttagcttctcctcatggcaacaatt |
2884986 |
T |
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| Q |
202 |
gcaatgacactatttttaagaactgag |
228 |
Q |
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| T |
2884987 |
gcaatgacactatttttaagaactgag |
2885013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 2899773 - 2899686
Alignment:
| Q |
2 |
gaactattaaaggctaacttttcaagagagtatttgcttatgaaaagaaattcctttgtttacatcttcaagatatgtcaggtaaatt |
89 |
Q |
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| T |
2899773 |
gaactgttaaaggctaacttctcaagagaatatttgcttatgaaaaggaattcctttgtttacatcttcaagatatgtcaggtaaatt |
2899686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 2874918 - 2874992
Alignment:
| Q |
1 |
ggaactattaaaggctaacttttcaagagagtatttgcttatgaaaagaaattcctttgtttacatcttcaagat |
75 |
Q |
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| T |
2874918 |
ggaactattaaaggctaacatctcaagagagtttttgcttatgaaaagaaattcattcatttacctctttaagat |
2874992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 44235951 - 44235886
Alignment:
| Q |
8 |
ttaaaggctaacttttcaagagagtatttgcttatgaaaagaaattcctttgtttacatcttcaag |
73 |
Q |
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| T |
44235951 |
ttaaaggctaacttctcaagagagtatttgctcatgaaaagaaattcctttgtttacatcttcaag |
44235886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 44212976 - 44212911
Alignment:
| Q |
8 |
ttaaaggctaacttttcaagagagtatttgcttatgaaaagaaattcctttgtttacatcttcaag |
73 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||| |
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| T |
44212976 |
ttaaaggctaacttctcaagagagtatttgctcatgaaaaggaattcgtttgtttacatcttcaag |
44212911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 44225137 - 44225072
Alignment:
| Q |
8 |
ttaaaggctaacttttcaagagagtatttgcttatgaaaagaaattcctttgtttacatcttcaag |
73 |
Q |
| |
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|||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||| |
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| T |
44225137 |
ttaaaggctaacttctcaagagagtatttgctcatgaaaaggaattcgtttgtttacatcttcaag |
44225072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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