View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7980_low_2 (Length: 570)
Name: NF7980_low_2
Description: NF7980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7980_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 10 - 551
Target Start/End: Original strand, 41219050 - 41219589
Alignment:
| Q |
10 |
gaagaatatccaaatggttatagaaacaaatgagttgaaagcaataagatgtggtaaagtctcat-ttgtgtgttggccgaagttacaatagtcacattg |
108 |
Q |
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| T |
41219050 |
gaagaatatccaaatggttatagaaacaaatgagttgaaagcaataagatgtggtaaagtctcatattgtgtgttggccgaagttacaatagtcacattg |
41219149 |
T |
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| Q |
109 |
aaccctcgaatatgttcgaagatctcgaacatatcttccagttctagggagaattcgcaaaactccgtttccatcgagaattaaatggagttttcccgta |
208 |
Q |
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| T |
41219150 |
aaccctcgaatatgttcgaagatcttgaacatatcttccagttctagggagaattcgcaaaactccgtttccatcgagaattaaatggagttttcccgta |
41219249 |
T |
|
| Q |
209 |
tttcgacaggagaatctaacagaatccaaacctaaataatgtgctaaatgtagaaatgaagcatatatcaagggatcaaaacttgatttcttagctttag |
308 |
Q |
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| T |
41219250 |
tttcgacaggagaatctaacagaatccaaacctaaataacgtgctaaatgtagaaatgaagcatatatcaagggatcaaaacttgatttcttagctttat |
41219349 |
T |
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| Q |
309 |
tgtg-taattattaaatgtttgaatcaagtctaacttcaactagttcatattgaattatcttattcatcatgtgtcaaaacaccaacattactatgtttg |
407 |
Q |
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| T |
41219350 |
tgtgttaattattaaatgtttgaatcaagtctaacttcaactagttcatattgaattatcttattcatcatgtgtcaaaacaccaacattactatgtttg |
41219449 |
T |
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| Q |
408 |
aggatgaaaacatacacttacagaatgccattttaaacgcgtgtcagaaatatatcatccaaacttcgattttcttactgatattttcatactctcacat |
507 |
Q |
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| T |
41219450 |
aggatgaaaacaaacacttacagaatgccattttaaacgcgtatcagaaatatatcatccaaacttcgattttcttactgatattttcatactctcacat |
41219549 |
T |
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| Q |
508 |
atgtacgtgttaatattttcaaacatttatgtaatggaactagg |
551 |
Q |
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| T |
41219550 |
at----gtgttaatattttcaaacatttatgtaatggaactagg |
41219589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 13340782 - 13340832
Alignment:
| Q |
60 |
gtggtaaagtctcat-ttgtgtgttggccgaagttacaatagtcacattga |
109 |
Q |
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||||||||||||| | || |||||||| ||||||||||||||||||||||| |
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| T |
13340782 |
gtggtaaagtctcttattatgtgttggtcgaagttacaatagtcacattga |
13340832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 24499336 - 24499410
Alignment:
| Q |
63 |
gtaaagtctcat-ttgtgtgttggccgaagttacaatagtcacattgaaccctcgaatatgttcgaagatctcga |
136 |
Q |
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| T |
24499336 |
gtaaagtctcatattgtgtgttggtcgaagttacaataatcacattgaatcctcgaatatgttcgaagatctcga |
24499410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 82 - 205
Target Start/End: Complemental strand, 39462312 - 39462183
Alignment:
| Q |
82 |
ttggccgaagttacaatagtcacattgaaccctcgaatatgttcgaagatctcgaacatatcttccagttctagggagaattcgcaaaactc------cg |
175 |
Q |
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|||||| |||| ||| ||||||||||||| |||||||||| ||||||||||| || |||||||| |||| |||| |||| ||||||||| || |
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| T |
39462312 |
ttggccaaagtgacagtagtcacattgaatcctcgaatattttcgaagatctaaaaataatcttccacttctggggataatttgcaaaactcccttctcg |
39462213 |
T |
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| Q |
176 |
tttccatcgagaattaaatggagttttccc |
205 |
Q |
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| T |
39462212 |
attccatcgataattgaatggagttttccc |
39462183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 39409177 - 39409229
Alignment:
| Q |
177 |
ttccatcgagaattaaatggagttttcccgtatttcgacaggagaatctaaca |
229 |
Q |
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|||||||||||||| |||||||||| ||||||||||||| |||||||||||| |
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| T |
39409177 |
ttccatcgagaattgaatggagtttccccgtatttcgactagagaatctaaca |
39409229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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