View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7980_low_6 (Length: 367)

Name: NF7980_low_6
Description: NF7980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7980_low_6
NF7980_low_6
[»] chr7 (5 HSPs)
chr7 (18-359)||(33601646-33601987)
chr7 (18-323)||(33601060-33601370)
chr7 (184-257)||(7244665-7244739)
chr7 (151-206)||(991700-991756)
chr7 (184-220)||(2176872-2176908)
[»] chr4 (4 HSPs)
chr4 (170-266)||(30668012-30668099)
chr4 (61-116)||(30668248-30668303)
chr4 (202-251)||(18011874-18011924)
chr4 (201-257)||(55547055-55547112)
[»] chr8 (1 HSPs)
chr8 (184-257)||(20672735-20672809)
[»] chr3 (1 HSPs)
chr3 (189-257)||(46407905-46407974)
[»] chr6 (2 HSPs)
chr6 (153-212)||(9027508-9027568)
chr6 (184-220)||(31672538-31672575)
[»] chr1 (1 HSPs)
chr1 (206-257)||(11893604-11893655)
[»] chr5 (1 HSPs)
chr5 (190-257)||(12521518-12521587)
[»] chr2 (4 HSPs)
chr2 (202-251)||(3067396-3067446)
chr2 (174-253)||(3227698-3227778)
chr2 (234-266)||(7103484-7103516)
chr2 (202-257)||(42817387-42817443)


Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 33601987 - 33601646
Alignment:
Q  18 aacttatgccagtagataagctcaatctaatccaaacaggctttagtttctttaagcattgtaattgtacctttggattaaaattctaattgcatagcca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33601987 aacttatgccagtagataagctcaatctaatccaaacaggctttagtttctttaagcattgtaattgtacctttggattaaaattctaattgcatagcca 33601888  T
Q  118 tacatagattaattaaatgcttagtagcttacaacataagtgcttatcatgagttatttctacactaaaaaataaaataaagtcaaactgttttataagc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33601887 tacatagattaattaaatgcttagtagcttacaacataagtgcttatcatgagttatttctacactaaaaaataaaataaagtcaaactgttttataagc 33601788  T
Q  218 tattgtgaagactttatgaaaataagctaaaaacaacttagggatatgttgcaagttgtttcatgtcagaatttatatctataaatttttccagagcttc 317  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33601787 tattgtgaagactttatgaaaataagctaaaaacaacttaaggatatgttgcaagttgtttcatgtcagaatttatatctataaatttttccagagcttc 33601688  T
Q  318 aatattgtttgatgtttattataagtgtcaatgtttcttctc 359  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33601687 aatattgtttgatgtttattataagtgtcaatgtttcttctc 33601646  T

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Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 33601370 - 33601060
Alignment:
Q  18 aacttatgccagtagataagctcaa----tctaatccaaacaggctttagtttctttaagcattgtaattgtacctttggattaaaattctaattgcata 113  Q
    ||||||||||| |||||||||||||    || | ||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||    
T  33601370 aacttatgccaatagataagctcaaataatcaattccaaaccggctttagtttctttaagcatagtaattgtacctttggattgaaattctaattgaata 33601271  T
Q  114 gccatacatagattaattaaatgcttagtagcttacaacataagtgcttatcatgagttatttctacactaaaaaataaaataaagtcaaactgtttt-a 212  Q
    |||| ||||||||||||||||  ||  ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33601270 gccaaacatagattaattaaacactcggtagcttgcagcataagtgcttatcatgagttatttctacactaaaaaataaaataaagtcaaactgttttca 33601171  T
Q  213 taagctattgtgaagactttatgaaaataagctaaaaacaacttagggatatgttgcaagttgtttcatgtcagaatttatatctataaatttttccaga 312  Q
    ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33601170 taagctattgcaaagagtttatgaaaataagctaaaaacaacttagggatatgttgcaagttgtttcatgtcagaatttatatctataaatttttccaaa 33601071  T
Q  313 gcttcaatatt 323  Q
    |||| ||||||    
T  33601070 gctttaatatt 33601060  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 7244665 - 7244739
Alignment:
Q  184 aaaaaataaaataaagtcaaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaactta 257  Q
    |||| |||||| |||||||||||||||| |||||||||  || |||  ||||||||||||||| |||||||||||    
T  7244665 aaaagataaaagaaagtcaaactgttttcataagctatattggagagcttatgaaaataagctgaaaacaactta 7244739  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 991700 - 991756
Alignment:
Q  151 acataagtgcttat-catgagttatttctacactaaaaaataaaataaagtcaaact 206  Q
    |||||||||||||| ||| ||||||||||  ||||||| ||||||||||| ||||||    
T  991700 acataagtgcttatgcataagttatttctctactaaaatataaaataaagacaaact 991756  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 2176872 - 2176908
Alignment:
Q  184 aaaaaataaaataaagtcaaactgttttataagctat 220  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  2176872 aaaagataaaataaagtcaaactgctttataagctat 2176908  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 30668099 - 30668012
Alignment:
Q  170 gttatttctacactaaaaaataaaataaagtcaaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaacttagggatatgt 266  Q
    ||||||||||||| |||||||||||||||| |||||||| || |||||||| |          |||||||||||||||||||||||||||||||||||    
T  30668099 gttatttctacaccaaaaaataaaataaagccaaactgtcttcataagctact----------tatgaaaataagctaaaaacaacttagggatatgt 30668012  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 30668303 - 30668248
Alignment:
Q  61 tagtttctttaagcattgtaattgtacctttggattaaaattctaattgcatagcc 116  Q
    ||||||||||||   | ||||||||||||||||||| ||||| |||||||||||||    
T  30668303 tagtttctttaactgtagtaattgtacctttggattgaaattttaattgcatagcc 30668248  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 18011874 - 18011924
Alignment:
Q  202 aaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaac 251  Q
    |||||||||| |||||||||  |||||| ||||||||||||||||||||||    
T  18011874 aaactgttttcataagctatcttgaagagtttatgaaaataagctaaaaac 18011924  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 55547112 - 55547055
Alignment:
Q  201 caaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaactta 257  Q
    ||||||||||| |||||||||  |||| | |||||| |||||||||||||||||||||    
T  55547112 caaactgttttcataagctatgctgaaaagtttatggaaataagctaaaaacaactta 55547055  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 20672735 - 20672809
Alignment:
Q  184 aaaaaataaaataaagtcaaactg-ttttataagctattgtgaagactttatgaaaataagctaaaaacaactta 257  Q
    |||| ||||||||||||||||||| |||||||||||||  || |||  ||||||||||||||| |||||| ||||    
T  20672735 aaaagataaaataaagtcaaactgtttttataagctatcctggagagcttatgaaaataagctgaaaacagctta 20672809  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 46407974 - 46407905
Alignment:
Q  189 ataaaataaagtcaaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaactta 257  Q
    ||||| |||||| |||||||||| |||||||||||||| ||  || ||||||||||||| ||||||||||    
T  46407974 ataaagtaaagttaaactgttttcataagctattgtgatgagcttgtgaaaataagctagaaacaactta 46407905  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 9027508 - 9027568
Alignment:
Q  153 ataagtgcttatc-atgagttatttctacactaaaaaataaaataaagtcaaactgtttta 212  Q
    ||||||||||||| || || |||||||||| || || ||||||||||||||||||||||||    
T  9027508 ataagtgcttatctataagctatttctacaatagaagataaaataaagtcaaactgtttta 9027568  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 31672575 - 31672538
Alignment:
Q  184 aaaaaataaaataaagtcaaactgtttt-ataagctat 220  Q
    |||||||||||||||||||||||||||| |||||||||    
T  31672575 aaaaaataaaataaagtcaaactgttttcataagctat 31672538  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 11893655 - 11893604
Alignment:
Q  206 tgttttataagctattgtgaagactttatgaaaataagctaaaaacaactta 257  Q
    ||||| |||||||||| |||||| |||||| ||||||||| |||||||||||    
T  11893655 tgtttcataagctattttgaagagtttatggaaataagctgaaaacaactta 11893604  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 257
Target Start/End: Original strand, 12521518 - 12521587
Alignment:
Q  190 taaaataaagtcaaactgtttt--ataagctattgtgaagactttatgaaaataagctaaaaacaactta 257  Q
    ||||||| ||||||||||||||  |||||||||| ||||||  ||||| ||||||||| |||||| ||||    
T  12521518 taaaatagagtcaaactgttttgtataagctattttgaagagcttatggaaataagctgaaaacagctta 12521587  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 3067446 - 3067396
Alignment:
Q  202 aaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaac 251  Q
    |||||||||| |||||||||  |||||| ||||||||||||||||||||||    
T  3067446 aaactgttttcataagctatcttgaagagtttatgaaaataagctaaaaac 3067396  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 3227778 - 3227698
Alignment:
Q  174 tttctacactaaaaaataaaataaagtcaaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaa 253  Q
    |||||| | |||||||||||| ||||| ||| |||||| |||||||||| || |||  || |||||||||||| |||||||    
T  3227778 tttctataataaaaaataaaacaaagttaaattgttttcataagctattttggagagattttgaaaataagctgaaaacaa 3227698  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 7103516 - 7103484
Alignment:
Q  234 tgaaaataagctaaaaacaacttagggatatgt 266  Q
    |||||||||||||||||||||||| ||||||||    
T  7103516 tgaaaataagctaaaaacaacttatggatatgt 7103484  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 42817443 - 42817387
Alignment:
Q  202 aaactgtttt-ataagctattgtgaagactttatgaaaataagctaaaaacaactta 257  Q
    |||||||||| |||||||||| ||||||  ||||| || ||||||||||||||||||    
T  42817443 aaactgttttcataagctattctgaagagcttatggaagtaagctaaaaacaactta 42817387  T

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