View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7980_low_9 (Length: 298)
Name: NF7980_low_9
Description: NF7980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7980_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 42524060 - 42524337
Alignment:
| Q |
8 |
aatagaaaaacattaatttttatttattctaagagtcattgtttttgttatattaagataaactaatta---tgtctttttacaggtgttggatggtgag |
104 |
Q |
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| T |
42524060 |
aatagaaaaacattaatttttatttattctaagagtcattgtttttgttatattaagataaactaattactatgtctttttacaggtgttggatggtgag |
42524159 |
T |
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| Q |
105 |
catccatttgcattaagaatgaggcaacatggttatactggaggattgaagatgttgcatcactgttacattgattctattggtcaagaaaataagtcta |
204 |
Q |
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| T |
42524160 |
catccatttgcattaagaatgaggcaacatggttatactggaggattgaagatgttgcatcactgttacattgattctattggtcaagaaaataagtctg |
42524259 |
T |
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| Q |
205 |
atgaactgaagatggaagctcgaatccattgcataactggaaaaacttcgttgggcatgaaagcaaccatgtagatga |
282 |
Q |
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| T |
42524260 |
atgaactgaagatggaagctcaaatccattgcataactgaaaaaacttcgttgggcatgaaagcaaccatgtagatga |
42524337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 42517406 - 42517682
Alignment:
| Q |
8 |
aatagaaaaacattaatttttatttattctaagagtcattgtttttgttatattaagataaactaat--tatgtctttttacaggtgttggatggtgagc |
105 |
Q |
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| T |
42517406 |
aatagaaaaacattaatttttatttattctaagagtcattgtttttgttatattaagataaacaattactatgtctttttacaggtgttggatggtgagc |
42517505 |
T |
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| Q |
106 |
atccatttgcattaagaatgaggcaacatggttatactggaggattgaagatgttgcatcactgttacattgattctattggtcaagaaaataagtctaa |
205 |
Q |
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| T |
42517506 |
atccatttgcattaagaatgaggcaacatggttatactggaggattgaagatgttgcatcactgttacattgattctattggtcaagaaaataagtctga |
42517605 |
T |
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| Q |
206 |
tgaactgaagatggaagctcgaatccattgcataactggaaaaacttcgttgggcatgaaagcaaccatgtagatga |
282 |
Q |
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| T |
42517606 |
tgaactgaagatggaagctcaaatccattgcataactgaaaaaactttgttgggcatgaaagcaactatgtagatga |
42517682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 76 - 282
Target Start/End: Original strand, 42508015 - 42508221
Alignment:
| Q |
76 |
atgtctttttacaggtgttggatggtgagcatccatttgcattaagaatgaggcaacatggttatactggaggattgaagatgttgcatcactgttacat |
175 |
Q |
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| T |
42508015 |
atgtctttttacaggttttgggtggtgagcatccatttgcattaagaatgaggcaacatggttatactggaggattgaagatgttgcatcactgttacat |
42508114 |
T |
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| Q |
176 |
tgattctattggtcaagaaaataagtctaatgaactgaagatggaagctcgaatccattgcataactggaaaaacttcgttgggcatgaaagcaaccatg |
275 |
Q |
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| T |
42508115 |
tgattctattggtcaagaaaataagtctgatgaactgaagatggaagctcaaatccattgcataactgaaaaaacttcgttgggcatgaaagcaactatg |
42508214 |
T |
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| Q |
276 |
tagatga |
282 |
Q |
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||||||| |
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| T |
42508215 |
tagatga |
42508221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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