View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7981_high_5 (Length: 252)
Name: NF7981_high_5
Description: NF7981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7981_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 48431563 - 48431784
Alignment:
| Q |
14 |
cacacacgctataatacttgcattgaggtttatgcagatcataagtgatgacaggaatggcattgcaaacgtcaaacgaaaatgctatttatatcagcat |
113 |
Q |
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| T |
48431563 |
cacacacactataatacttgcattgaggtttatgcagatcataagtgatgacaggaatggcattgcaaacgtcaaacgaaaatgctatttatatcagcat |
48431662 |
T |
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| Q |
114 |
ttcaaaccaaggaccttagtaaacttgggcatcgttgggtataaaagagaccagatcaaactaataacgattttatttttcttaagaggagatatgtaac |
213 |
Q |
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| T |
48431663 |
ttcaaaccaaggaccttagtaaacttgggcattgttgggtataaaagagaccagatcaaactaataaggattttatttttcttaagaggagatatgtaac |
48431762 |
T |
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| Q |
214 |
caatctgtagaaggaaagacat |
235 |
Q |
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|||||||||||||||||||||| |
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| T |
48431763 |
caatctgtagaaggaaagacat |
48431784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 59 - 217
Target Start/End: Complemental strand, 23707506 - 23707348
Alignment:
| Q |
59 |
tgatgacaggaatggcattgcaaacgtcaaacgaaaatgctatttatatcagca-tttcaaaccaaggaccttagtaaacttgggcatcgtt-gggtata |
156 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||| ||||||||||||||||| ||||| ||| ||||||| |
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| T |
23707506 |
tgatgacaggaatggcattgcaaacgtcaaaagaaaatgctatttatattggcattttcaaac--aggaccttagtaaacttaggcattgttggggtata |
23707409 |
T |
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| Q |
157 |
aaagagaccagatcaaactaataacgattttatttttcttaagaggagatatgtaaccaat |
217 |
Q |
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| T |
23707408 |
gaagaggccagatcaaactaataaggattttatgtttctcaagaggagatatgtaagcaat |
23707348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 52807982 - 52808083
Alignment:
| Q |
116 |
caaaccaaggaccttagtaaacttgggcatcgttgggtataaaagagaccagatcaaactaataacgattttatttttcttaagaggagatatgtaacca |
215 |
Q |
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||||||||||||||||||||||||| |||| |||||||||| ||| | |||||||||||||||| |||||||||||||| |||||||||||||||| || |
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| T |
52807982 |
caaaccaaggaccttagtaaacttgcgcattgttgggtatagaaggggccagatcaaactaatatggattttatttttctcaagaggagatatgtaatca |
52808081 |
T |
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| Q |
216 |
at |
217 |
Q |
| |
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|| |
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| T |
52808082 |
at |
52808083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 54140147 - 54139936
Alignment:
| Q |
22 |
ctataatacttgcattgaggtttatgcagatcata----------ag-tgatgacaggaatggcattgcaaacgtcaaacgaa-aatgctatttatatca |
109 |
Q |
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||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||| |||||| ||| |||||||||||||| |
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| T |
54140147 |
ctataatacttgcattgaggtttatgcagatcatattatcattacagataatgacaggaatggcattgcaaaagtcaaaagaagaatgctatttatattg |
54140048 |
T |
|
| Q |
110 |
gca-tttcaaaccaaggaccttagtaaacttgggcatcgtt-gggtataaaagagaccagatca----aactaataacgattttatttttcttaagagga |
203 |
Q |
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||| ||||||||| |||||||||||||||||||||| ||| ||| ||| ||||| ||| |||| ||||||||| |||||||||| ||| | ||||| |
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| T |
54140047 |
gcaatttcaaacc--ggaccttagtaaacttgggcattgttggggaatagaagaggccaaatcaaactaactaataaggattttatttatctcaggagga |
54139950 |
T |
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| Q |
204 |
gatatgtaaccaat |
217 |
Q |
| |
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||||| ||| |||| |
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| T |
54139949 |
gatatctaatcaat |
54139936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 1924514 - 1924466
Alignment:
| Q |
165 |
cagatcaaactaataacgattttatttttcttaagaggagatatgtaac |
213 |
Q |
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|||||||||||||||| ||| ||||||||| ||||||| ||||||||| |
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| T |
1924514 |
cagatcaaactaataagaattatatttttctcaagaggaaatatgtaac |
1924466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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