View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7981_low_1 (Length: 783)

Name: NF7981_low_1
Description: NF7981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7981_low_1
NF7981_low_1
[»] chr1 (19 HSPs)
chr1 (3-241)||(30528814-30529051)
chr1 (244-386)||(14758526-14758669)
chr1 (253-396)||(30529336-30529474)
chr1 (245-385)||(44920186-44920327)
chr1 (494-638)||(30529567-30529711)
chr1 (248-391)||(35508361-35508506)
chr1 (266-385)||(51681629-51681747)
chr1 (244-373)||(41649853-41649983)
chr1 (309-409)||(46729205-46729305)
chr1 (245-386)||(19547045-19547187)
chr1 (276-375)||(13792004-13792103)
chr1 (244-335)||(8462857-8462949)
chr1 (289-363)||(18032202-18032276)
chr1 (275-367)||(26533731-26533823)
chr1 (289-386)||(46895945-46896042)
chr1 (315-386)||(36564489-36564560)
chr1 (246-315)||(25670838-25670908)
chr1 (250-332)||(11411017-11411100)
chr1 (244-313)||(43492198-43492268)
[»] chr5 (11 HSPs)
chr5 (244-386)||(248457-248601)
chr5 (245-407)||(20125629-20125790)
chr5 (246-386)||(42877213-42877354)
chr5 (280-386)||(16980741-16980848)
chr5 (289-410)||(40944239-40944360)
chr5 (244-332)||(591274-591363)
chr5 (282-335)||(4857266-4857319)
chr5 (289-385)||(11010257-11010353)
chr5 (245-332)||(13978682-13978770)
chr5 (292-367)||(22528746-22528821)
chr5 (356-410)||(29558281-29558335)
[»] chr8 (15 HSPs)
chr8 (244-385)||(20142436-20142578)
chr8 (250-409)||(14237099-14237261)
chr8 (276-386)||(43238137-43238247)
chr8 (276-385)||(33285922-33286031)
chr8 (275-386)||(14855580-14855691)
chr8 (276-384)||(23984254-23984362)
chr8 (243-385)||(44042503-44042646)
chr8 (289-385)||(10565358-10565454)
chr8 (288-384)||(40464406-40464502)
chr8 (240-385)||(4166458-4166604)
chr8 (300-386)||(6904192-6904278)
chr8 (293-336)||(39312202-39312245)
chr8 (289-350)||(37564364-37564425)
chr8 (244-332)||(44254177-44254266)
chr8 (289-373)||(31265010-31265094)
[»] chr7 (10 HSPs)
chr7 (244-385)||(44319852-44319994)
chr7 (276-409)||(26202-26334)
chr7 (276-386)||(6771837-6771947)
chr7 (276-386)||(5495969-5496076)
chr7 (244-376)||(6775198-6775331)
chr7 (276-371)||(41898254-41898349)
chr7 (242-386)||(3298184-3298328)
chr7 (244-332)||(5248683-5248772)
chr7 (346-386)||(31902745-31902785)
chr7 (236-332)||(6388003-6388100)
[»] chr2 (9 HSPs)
chr2 (276-397)||(32438067-32438188)
chr2 (276-386)||(33962939-33963049)
chr2 (250-378)||(37597460-37597590)
chr2 (278-383)||(18734354-18734459)
chr2 (316-387)||(7933334-7933405)
chr2 (289-372)||(18684375-18684458)
chr2 (276-350)||(9153506-9153580)
chr2 (289-363)||(32859798-32859872)
chr2 (289-386)||(32770766-32770863)
[»] chr3 (15 HSPs)
chr3 (247-385)||(3973783-3973922)
chr3 (247-385)||(3995955-3996094)
chr3 (247-385)||(4009483-4009622)
chr3 (275-410)||(49682166-49682301)
chr3 (245-386)||(21813152-21813290)
chr3 (276-353)||(31294370-31294447)
chr3 (278-379)||(32606385-32606486)
chr3 (289-386)||(39144981-39145077)
chr3 (289-386)||(29212713-29212810)
chr3 (275-363)||(29484855-29484943)
chr3 (268-378)||(34285341-34285448)
chr3 (276-363)||(36494175-36494263)
chr3 (289-373)||(54290786-54290870)
chr3 (250-314)||(32734654-32734719)
chr3 (299-372)||(43803992-43804065)
[»] scaffold0027 (1 HSPs)
scaffold0027 (266-410)||(122437-122582)
[»] chr4 (14 HSPs)
chr4 (276-392)||(38380458-38380574)
chr4 (247-353)||(31655473-31655580)
chr4 (243-382)||(32892977-32893117)
chr4 (276-386)||(38949055-38949165)
chr4 (276-378)||(39804890-39804993)
chr4 (288-362)||(23133068-23133142)
chr4 (245-327)||(50131028-50131113)
chr4 (317-378)||(34469571-34469632)
chr4 (287-385)||(7388786-7388884)
chr4 (245-342)||(28695734-28695832)
chr4 (300-385)||(49011880-49011965)
chr4 (303-386)||(55855175-55855255)
chr4 (250-350)||(40071282-40071383)
chr4 (289-372)||(2063488-2063571)
[»] scaffold0633 (1 HSPs)
scaffold0633 (244-373)||(5013-5143)
[»] chr6 (3 HSPs)
chr6 (276-386)||(29988325-29988433)
chr6 (241-315)||(29407967-29408042)
chr6 (289-386)||(10570938-10571035)
[»] scaffold0172 (1 HSPs)
scaffold0172 (248-363)||(13436-13552)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 30528814 - 30529051
Alignment:
Q  3 ggtgggtagataatactatatacatatggttgcaaatttgctgtgtttagttgcaaaatttaatttagtcaataatgaaccgttatgagatactagtatt 102  Q
    |||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30528814 ggtgggtccataatgctatatacatatggttgcaaatttgctgtgtttagttgcaaaatttaatttagtcaataatgaaccgttatgagatactagtatt 30528913  T
Q  103 gaatgaagactgcatttggattggattagggtttaatgatttaacactaaagcacaaagttgatgtgtaatgattttgtttctctgctgatgtatctctt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  30528914 gaatgaagactgcatttggattggattagggtttaatgatttaacactaaagcataaagttgatgtgtaatgattttgtttctctgctgatgtatct-tt 30529012  T
Q  203 tctaagacattcttatccatgtattggtgatagttatta 241  Q
    |||| ||||||||||||| |||||| || ||||||||||    
T  30529013 tctaggacattcttatccttgtattagtcatagttatta 30529051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 244 - 386
Target Start/End: Original strand, 14758526 - 14758669
Alignment:
Q  244 agggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaa 342  Q
    |||||||||||||||||||   |||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||| |||||||| ||||| ||| |    
T  14758526 agggtcttgttaacgagtgtcctaagggcactctttaaagttttccaattaagaaattattccttaaaaaagtttaacatttcaattttcgatgcattga 14758625  T
Q  343 atgcacaatttcccataaaaatttattatttaaagtccttaaag 386  Q
    |||||||||||  |||||||||||| ||||||||||||||||||    
T  14758626 atgcacaatttttcataaaaatttactatttaaagtccttaaag 14758669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 253 - 396
Target Start/End: Original strand, 30529336 - 30529474
Alignment:
Q  253 ttaacgagtgctttaagggcacttttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatt 352  Q
    |||||||||||| ||||||||||      ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||    
T  30529336 ttaacgagtgctctaagggcactc-----gtttttcaattaagaaattattctttgaaaaaatttaacacttcaatttctgatgcattaaatgcacaatt 30529430  T
Q  353 tcccataaaaatttattatttaaagtccttaaagtatgccttaa 396  Q
    | ||||||||||||| |||||||||||||||||| ||| |||||    
T  30529431 ttccataaaaatttactatttaaagtccttaaagaatgtcttaa 30529474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 245 - 385
Target Start/End: Original strand, 44920186 - 44920327
Alignment:
Q  245 gggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaa 343  Q
    |||||||||||||||||| |||||||||| | ||||||||||  ||||||||||||||||| || ||||||||||||||||||||||  |||| ||| ||    
T  44920186 gggtcttgttaacgagtgttttaagggcattctttaaggtttctcaattaagaaattattcattaaaaaagtttaacacttcaatttatgatgcattgaa 44920285  T
Q  344 tgcacaatttcccataaaaatttattatttaaagtccttaaa 385  Q
    |||||||||| ||||||||||||| ||||| |||||||||||    
T  44920286 tgcacaattttccataaaaatttactatttcaagtccttaaa 44920327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 494 - 638
Target Start/End: Original strand, 30529567 - 30529711
Alignment:
Q  494 agccaattctattatagaaattagcaaaagtttgaagnnnnnnnn-taggattgtgatagatttaagaattttaggtccgatgaagttaattttggcttt 592  Q
    ||||||||||||||| |||||||||||||||||||||         ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  30529567 agccaattctattattgaaattagcaaaagtttgaagaaaaaaaaataggattgtgacagatttaagaactttaggtccgatgaagttaattttggcttt 30529666  T
Q  593 ctaaaagaattttgggnnnnnnntcaagaatgaggttgttatattt 638  Q
    ||||||||||||||||       |||||||||||||||||||||||    
T  30529667 ctaaaagaattttggg-aagaaatcaagaatgaggttgttatattt 30529711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 248 - 391
Target Start/End: Original strand, 35508361 - 35508506
Alignment:
Q  248 tcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgta-ttaaatg 345  Q
    ||||||||||||||||  | | | |||| |||| |||||  |||||||||||||||||||||||||| |||||||||||||||||| ||| | |||||||    
T  35508361 tcttgttaacgagtgccctgatgacactctttatggtttctcaattaagaaattattctttgaaaaaatttaacacttcaatttccaatgcatttaaatg 35508460  T
Q  346 cacaatttcccataaaaatttattatttaaagtccttaaagtatgc 391  Q
     |||||||| |||||||||||||||||||||||| |||||| ||||    
T  35508461 tacaatttctcataaaaatttattatttaaagtctttaaagaatgc 35508506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 266 - 385
Target Start/End: Original strand, 51681629 - 51681747
Alignment:
Q  266 taagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaat 364  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||| |||| ||||||| ||||  ||||    
T  51681629 taagggcactctttaaggtttcccaattaagaaattattctttgaaaaagtttaacactttaatttccggtgcattgaatgtacaattttccat--aaat 51681726  T
Q  365 ttattatttaaagtccttaaa 385  Q
    |||||||||| ||| ||||||    
T  51681727 ttattatttagagttcttaaa 51681747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 244 - 373
Target Start/End: Original strand, 41649853 - 41649983
Alignment:
Q  244 agggtcttgttaacgagtgctttaagggcactttt-aaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaa 342  Q
    |||||||||||||| ||||| |||||  ||||||| ||||||| |||||||| ||||||||| || ||||||||||||| |||||||||| ||| ||| |    
T  41649853 agggtcttgttaacaagtgccttaagaacactttttaaggtttcccaattaaaaaattattccttaaaaaagtttaacatttcaatttcccatgcattga 41649952  T
Q  343 atgcacaatttcccataaaaatttattattt 373  Q
    ||||| ||||| ||||||||||||| |||||    
T  41649953 atgcataattttccataaaaatttactattt 41649983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 309 - 409
Target Start/End: Original strand, 46729205 - 46729305
Alignment:
Q  309 aaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaagtatgccttaaggacattcgtta 408  Q
    |||||| |||||||||||| |||||||| ||| |||||||||||| ||||||||||||| ||||||||||||||||||  |||||| ||| || ||||||    
T  46729205 aaaaagattaacacttcaaattccgatgcattgaatgcacaattttccataaaaatttactatttaaagtccttaaagagtgcctttagggcactcgtta 46729304  T
Q  409 a 409  Q
    |    
T  46729305 a 46729305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 245 - 386
Target Start/End: Complemental strand, 19547187 - 19547045
Alignment:
Q  245 gggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaa 343  Q
    |||||||| ||||||||||  |||||||| | ||||||| || |||| ||||||||||||| ||||||| ||  || ||||||||| |||||| ||| ||    
T  19547187 gggtcttgctaacgagtgccctaagggcattctttaaggattcccaagtaagaaattattcattgaaaatgtccaatacttcaattcccgatgcattgaa 19547088  T
Q  344 tgcacaatttcccataaaaatttattatttaaagtccttaaag 386  Q
    ||||||| || | ||||||| ||| ||| ||||||||||||||    
T  19547087 tgcacaagtttctataaaaacttactatataaagtccttaaag 19547045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 276 - 375
Target Start/End: Complemental strand, 13792103 - 13792004
Alignment:
Q  276 tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaa 375  Q
    |||||||||||  |||||| |||||||| ||| |||||||||||||||||||||   |||| ||| |||||||||||||  ||||||||||| |||||||    
T  13792103 tttaaggttttttaattaaaaaattatttttttaaaaagtttaacacttcaattattgatgcatttaatgcacaatttcttataaaaatttactatttaa 13792004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 244 - 335
Target Start/End: Original strand, 8462857 - 8462949
Alignment:
Q  244 agggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgat 335  Q
    ||||||| |||||||||||  || || ||||| |||||| |||| ||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  8462857 agggtctcgttaacgagtgtctttagagcactctttaagatttttcaactaaaaaattattatttgaaaaagtttaacacttcaatttccgat 8462949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 289 - 363
Target Start/End: Original strand, 18032202 - 18032276
Alignment:
Q  289 aattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaa 363  Q
    |||||||||||||||  ||||||||||||||  ||||||||||||||| |||||||||| || || |||||||||    
T  18032202 aattaagaaattatttattgaaaaagtttaatgcttcaatttccgatgcattaaatgcataagtttccataaaaa 18032276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 275 - 367
Target Start/End: Complemental strand, 26533823 - 26533731
Alignment:
Q  275 ttttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaattta 367  Q
    |||||||| ||  |||||||||||||||   |||||||||| ||||  ||||||||||| ||| |||||||||||| || |||||||||||||    
T  26533823 ttttaaggattctcaattaagaaattatcaattgaaaaagtctaacgtttcaatttccgctgttttaaatgcacaagtttccataaaaattta 26533731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 289 - 386
Target Start/End: Original strand, 46895945 - 46896042
Alignment:
Q  289 aattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 386  Q
    |||||||||||||||  |||||||||| ||| | |||||||||||||| ||| |||||| || || | ||||||| ||| ||| |||||||| |||||    
T  46895945 aattaagaaattatttattgaaaaagtctaatatttcaatttccgatgcattgaatgcataaatttctataaaaacttactatctaaagtccgtaaag 46896042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 315 - 386
Target Start/End: Complemental strand, 36564560 - 36564489
Alignment:
Q  315 tttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 386  Q
    |||||||||||||||||  | | ||| ||||||||||||  ||||||| |||| ||||||||||||||||||    
T  36564560 tttaacacttcaatttctaaagcattgaatgcacaatttttcataaaattttactatttaaagtccttaaag 36564489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 246 - 315
Target Start/End: Complemental strand, 25670908 - 25670838
Alignment:
Q  246 ggtcttgttaacgagtgctttaagggcac-ttttaaggttttccaattaagaaattattctttgaaaaagt 315  Q
    ||||||||||||||||||  |||| |||| |||||||| |||| ||| ||||||||||||||| |||||||    
T  25670908 ggtcttgttaacgagtgccctaagagcaccttttaaggatttctaataaagaaattattctttaaaaaagt 25670838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 11411100 - 11411017
Alignment:
Q  250 ttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttcc 332  Q
    |||||||||||||   ||||| |||| ||||||| ||||  ||||||||||||||| ||||||||||| || |||| |||||||    
T  11411100 ttgttaacgagtgtcctaaggacactctttaaggatttctcattaagaaattattcattgaaaaagttcaatactttaatttcc 11411017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 43492268 - 43492198
Alignment:
Q  244 agggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaa 313  Q
    ||||||||||||||||||||  |||||||||| ||||||| || | ||| ||||||||||| ||| |||||    
T  43492268 agggtcttgttaacgagtgccctaagggcactctttaaggattcctaataaagaaattattttttaaaaaa 43492198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 7e-45; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 244 - 386
Target Start/End: Complemental strand, 248601 - 248457
Alignment:
Q  244 agggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattatt-ctttgaaaaagtttaacacttcaatttccgatgtatta 341  Q
    |||||||||||||||||||  ||||||||||| ||||||||||  |||||||||||||||| |||| ||||||||||||||||||||||||||||||||     
T  248601 agggtcttgttaacgagtgtcttaagggcactctttaaggtttctcaattaagaaattatttctttaaaaaagtttaacacttcaatttccgatgtattg 248502  T
Q  342 aatgcacaatttcccataaaaatttattatttaaagtccttaaag 386  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||    
T  248501 aatgcacaattttccataaaaatttactatttcaagtccttaaag 248457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 245 - 407
Target Start/End: Complemental strand, 20125790 - 20125629
Alignment:
Q  245 gggtcttgttaacgagtgctttaagggcacttttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaat 344  Q
    ||||||||||||||||||  |||| ||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||||| ||||| | |||||    
T  20125790 gggtcttgttaacgagtgtcttaaaggcacttttaaagtttttcaattaagaa-ttattctttaaaaaagtttaacacttcaattttcgatgcactaaat 20125692  T
Q  345 gcacaatttcccataaaaatttattatttaaagtccttaaagtatgccttaaggacattcgtt 407  Q
    |||||||||  |||||||||||| |||||||||||||||||  || |||||||| || |||||    
T  20125691 gcacaatttttcataaaaatttactatttaaagtccttaaaaaattccttaaggtcactcgtt 20125629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 246 - 386
Target Start/End: Original strand, 42877213 - 42877354
Alignment:
Q  246 ggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaat 344  Q
    ||||||| ||||||||| | ||||| |||| ||||| ||||  ||||| ||||||||||| |  ||||||||||| | |||||||| | ||||||| |||    
T  42877213 ggtcttgctaacgagtgttctaaggacactctttaaagtttctcaattgagaaattattcatgaaaaaagtttaaaatttcaattttcaatgtattgaat 42877312  T
Q  345 gcacaatttcccataaaaatttattatttaaagtccttaaag 386  Q
     |||||||| ||||||||||||| ||||||||||| ||||||    
T  42877313 acacaattttccataaaaatttactatttaaagtctttaaag 42877354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 280 - 386
Target Start/End: Original strand, 16980741 - 16980848
Alignment:
Q  280 aggttttccaattaagaaattattcttt-gaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagt 378  Q
    ||||||| || ||||||||||||||||| || |||||||||||||||||||||||||  ||| |||| | |||||  ||||||||| || ||||||||||    
T  16980741 aggttttacatttaagaaattattcttttgagaaagtttaacacttcaatttccgatacattgaatgtataatttttcataaaaatgtactatttaaagt 16980840  T
Q  379 ccttaaag 386  Q
    | ||||||    
T  16980841 ctttaaag 16980848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 289 - 410
Target Start/End: Complemental strand, 40944360 - 40944239
Alignment:
Q  289 aattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaagta 388  Q
    |||||||||||||||| |||||||||| |||  ||||||||| ||||| ||| |||| |||| || ||||||||||||| ||| ||||||  |||||||     
T  40944360 aattaagaaattattcattgaaaaagtataatgcttcaattttcgatgcattgaatgtacaaatttccataaaaatttactatctaaagtatttaaagtg 40944261  T
Q  389 tgccttaaggacattcgttaac 410  Q
    || | |||| ||| ||||||||    
T  40944260 tgtcataagaacactcgttaac 40944239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 591363 - 591274
Alignment:
Q  244 agggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttcc 332  Q
    ||||||||||||||||||||  ||| | |||| ||||||| |||| ||| ||||||||||||||| |||||||  || ||||||||||||    
T  591363 agggtcttgttaacgagtgccctaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaacttcaatttcc 591274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 4857266 - 4857319
Alignment:
Q  282 gttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgat 335  Q
    ||||| |||||||||||||||||||||||||||||||||| || ||||| ||||    
T  4857266 gtttttcaattaagaaattattctttgaaaaagtttaacattttaattttcgat 4857319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 385
Target Start/End: Original strand, 11010257 - 11010353
Alignment:
Q  289 aattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaa 385  Q
    |||||||||| ||||| |||||||||| ||| ||||||||||| |||| ||| ||| ||||| || |||||||||  || ||| | |||||||||||    
T  11010257 aattaagaaactattcattgaaaaagtctaatacttcaatttctgatgcattgaatacacaactttccataaaaacatactatctgaagtccttaaa 11010353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 245 - 332
Target Start/End: Complemental strand, 13978770 - 13978682
Alignment:
Q  245 gggtcttgttaacgagtgctttaagggcactttt-aaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttcc 332  Q
    ||||||||||||||||||   ||| ||||||||| |||| |||||||| |||||||||||  || |||||||| || ||||||||||||    
T  13978770 gggtcttgttaacgagtgtcctaaaggcactttttaaggatttccaataaagaaattatttcttaaaaaagttaaaaacttcaatttcc 13978682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 367
Target Start/End: Complemental strand, 22528821 - 22528746
Alignment:
Q  292 taagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaattta 367  Q
    ||||||||||||| |||||||||||| |  ||||||||||||||  ||||||| || || ||  ||||||||||||    
T  22528821 taagaaattattcattgaaaaagtttgatgcttcaatttccgatacattaaatacataaattttcataaaaattta 22528746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 356 - 410
Target Start/End: Original strand, 29558281 - 29558335
Alignment:
Q  356 cataaaaatttattatttaaagtccttaaagtatgccttaaggacattcgttaac 410  Q
    ||||||||||||||||| ||||||||||||| ||| ||| ||  |||||||||||    
T  29558281 cataaaaatttattattaaaagtccttaaagaatgtctttagagcattcgttaac 29558335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 1e-43; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 244 - 385
Target Start/End: Complemental strand, 20142578 - 20142436
Alignment:
Q  244 agggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaa 342  Q
    |||||||||||||||||||   ||||| |||| |||||||| || |||||||||||||||| ||| |||||||||||||||| ||||| ||||| |||||    
T  20142578 agggtcttgttaacgagtgtcctaaggacactctttaaggtatttcaattaagaaattatttttttaaaaagtttaacactttaattttcgatgcattaa 20142479  T
Q  343 atgcacaatttcccataaaaatttattatttaaagtccttaaa 385  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  20142478 atgcacaatttcccataaaaatttattatttaaagtccttaaa 20142436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 250 - 409
Target Start/End: Original strand, 14237099 - 14237261
Alignment:
Q  250 ttgttaacgagtgctttaagggcact---tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgc 346  Q
    ||||||||||||||  | ||||||||   |||||| |||| ||||||| |||||||||  |  ||||||||||||||||||||||||||| |||||||||    
T  14237099 ttgttaacgagtgcccttagggcactctctttaagatttttcaattaaaaaattattccatataaaagtttaacacttcaatttccgatgcattaaatgc 14237198  T
Q  347 acaatttcccataaaaatttattatttaaagtccttaaagtatgccttaaggacattcgttaa 409  Q
    ||||||| ||||||||||||| |||||||||||||||||| ||||  ||||| || |||||||    
T  14237199 acaattttccataaaaatttactatttaaagtccttaaagaatgctctaagggcactcgttaa 14237261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 276 - 386
Target Start/End: Complemental strand, 43238247 - 43238137
Alignment:
Q  276 tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaa 375  Q
    ||||||||||| ||||||||||||||||| || |||||||||||||||||||||| ||||| |||||||| | ||||| ||||||||||||| |||||||    
T  43238247 tttaaggtttttcaattaagaaattattccttaaaaaagtttaacacttcaattttcgatgcattaaatgtagaattttccataaaaatttactatttaa 43238148  T
Q  376 agtccttaaag 386  Q
    ||| |||||||    
T  43238147 agttcttaaag 43238137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 276 - 385
Target Start/End: Complemental strand, 33286031 - 33285922
Alignment:
Q  276 tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaa 375  Q
    ||||||||||  |||||||||||||||| ||||||||| ||||||| |||||||| ||||||||||||| ||||||||  |||||||||||| |||||||    
T  33286031 tttaaggtttatcaattaagaaattattttttgaaaaaatttaacatttcaattttcgatgtattaaatacacaatttttcataaaaatttactatttaa 33285932  T
Q  376 agtccttaaa 385  Q
    ||||||||||    
T  33285931 agtccttaaa 33285922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 275 - 386
Target Start/End: Complemental strand, 14855691 - 14855580
Alignment:
Q  275 ttttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattattta 374  Q
    ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||| ||| |||  |||||||||||||||||||    
T  14855691 ttttaaggtttccctattaaaaaattattctttgaaaaagtttaacacttcaatttacgatgcatcaaatggacactttttcataaaaatttattattta 14855592  T
Q  375 aagtccttaaag 386  Q
    ||||| ||||||    
T  14855591 aagtctttaaag 14855580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 276 - 384
Target Start/End: Original strand, 23984254 - 23984362
Alignment:
Q  276 tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaa 375  Q
    ||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||  |||  | | || |||||||||  |||||||||||| |||||||    
T  23984254 tttaaagtttttcaattaagaaattattctttaaaaaagtttaacacctcaatttttgatacactgaaagcacaatttttcataaaaatttactatttaa 23984353  T
Q  376 agtccttaa 384  Q
    | |||||||    
T  23984354 aatccttaa 23984362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 243 - 385
Target Start/End: Original strand, 44042503 - 44042646
Alignment:
Q  243 tagggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtatta 341  Q
    |||||| ||||||||||||||  ||||| |||| ||||||| ||   |||||||||| ||||| ||||||||||| || |||||||||||| ||| |||     
T  44042503 tagggttttgttaacgagtgccctaaggacactctttaaggattcataattaagaaactattcattgaaaaagttcaatacttcaatttccaatgcattg 44042602  T
Q  342 aatgcacaatttcccataaaaatttattatttaaagtccttaaa 385  Q
    ||||||||| || | ||||||| ||| |||||||| || |||||    
T  44042603 aatgcacaaatttctataaaaacttactatttaaaatctttaaa 44042646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 289 - 385
Target Start/End: Original strand, 10565358 - 10565454
Alignment:
Q  289 aattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaa 385  Q
    |||||||||| ||||| |||||||||| ||| |||| |||||  |||||||| ||||||||| || ||||||||||||| ||| ||||||| |||||    
T  10565358 aattaagaaactattcattgaaaaagtctaatactttaatttttgatgtattgaatgcacaaatttccataaaaatttactatctaaagtctttaaa 10565454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 288 - 384
Target Start/End: Complemental strand, 40464502 - 40464406
Alignment:
Q  288 caattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaa 384  Q
    ||||||| ||| ||||| ||||||| |||||| | |||||||| |||||| || ||||||||| || ||||||||||||| |||| |||||||||||    
T  40464502 caattaaaaaactattcattgaaaatgtttaatatttcaattttcgatgttttgaatgcacaagttaccataaaaatttactattcaaagtccttaa 40464406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 240 - 385
Target Start/End: Original strand, 4166458 - 4166604
Alignment:
Q  240 tattagggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgta 338  Q
    ||||||||| ||||||||||||    |||||||||| ||||||| ||   ||| |||||||||||| ||||||||||| || | |||||||||| ||  |    
T  4166458 tattagggttttgttaacgagtttcctaagggcactctttaaggattcataatcaagaaattattcattgaaaaagttcaatatttcaatttccaataca 4166557  T
Q  339 ttaaatgcacaatttcccataaaaatttattatttaaagtccttaaa 385  Q
    || ||||||||| || ||||||||| ||  ||| ||||||| |||||    
T  4166558 ttgaatgcacaagtttccataaaaactttatatctaaagtctttaaa 4166604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 386
Target Start/End: Original strand, 6904192 - 6904278
Alignment:
Q  300 tattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 386  Q
    ||||| ||||||||||||||  ||||||||||||||| ||| || |||||| || ||||||||| ||| ||| ||||||| ||||||    
T  6904192 tattcattgaaaaagtttaatgcttcaatttccgatgcattgaacgcacaagtttccataaaaaattactatctaaagtctttaaag 6904278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 293 - 336
Target Start/End: Complemental strand, 39312245 - 39312202
Alignment:
Q  293 aagaaattattctttgaaaaagtttaacacttcaatttccgatg 336  Q
    |||||||||||| |||||||||||||| ||||||||||||||||    
T  39312245 aagaaattattcattgaaaaagtttaatacttcaatttccgatg 39312202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 350
Target Start/End: Complemental strand, 37564425 - 37564364
Alignment:
Q  289 aattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaa 350  Q
    ||||||||||||||||||| |||||||  || | |||||||||| ||||||||||| |||||    
T  37564425 aattaagaaattattctttaaaaaagtcaaatagttcaatttccaatgtattaaatacacaa 37564364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 44254266 - 44254177
Alignment:
Q  244 agggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttcc 332  Q
    |||||||||||||||||||   |||||||||| ||||||| |||| ||| |||||||| ||| || |||||||  || ||||||||||||    
T  44254266 agggtcttgttaacgagtgtcctaagggcactctttaaggatttctaataaagaaattcttccttaaaaaagtcaaaaacttcaatttcc 44254177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 31265010 - 31265094
Alignment:
Q  289 aattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattattt 373  Q
    ||||| ||| ||||||||| |||||||  |||| |||||||||| ||||||||||| ||||| ||  |||||||| ||| |||||    
T  31265010 aattaggaagttattctttaaaaaagtcaaacaattcaatttccaatgtattaaatacacaagttttcataaaaagttactattt 31265094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 1e-43; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 244 - 385
Target Start/End: Complemental strand, 44319994 - 44319852
Alignment:
Q  244 agggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaa 342  Q
    |||||||||||||||||||   ||||| |||| |||||||| || |||||||||||||||| ||| |||||||||||||||| ||||| ||||| |||||    
T  44319994 agggtcttgttaacgagtgtcctaaggacactctttaaggtatttcaattaagaaattatttttttaaaaagtttaacactttaattttcgatgcattaa 44319895  T
Q  343 atgcacaatttcccataaaaatttattatttaaagtccttaaa 385  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  44319894 atgcacaatttcccataaaaatttattatttaaagtccttaaa 44319852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 276 - 409
Target Start/End: Original strand, 26202 - 26334
Alignment:
Q  276 tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaa 375  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  26202 tttaaggttttc-aattaagaaattattctttgcaaaagtttaacactttaattttcgatgcattaaatgtacaatttcccataaaaatttattatttaa 26300  T
Q  376 agtccttaaagtatgccttaaggacattcgttaa 409  Q
    ||| ||||||| ||| | |||||||| |||||||    
T  26301 agttcttaaagaatgtcctaaggacactcgttaa 26334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 276 - 386
Target Start/End: Original strand, 6771837 - 6771947
Alignment:
Q  276 tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaa 375  Q
    ||||||||||  ||||||||||||||||||||||||||  | | || ||||||||||||| |||| |||||||||||| ||||||||||||| |||||||    
T  6771837 tttaaggtttctcaattaagaaattattctttgaaaaaactcaccatttcaatttccgatatattgaatgcacaattttccataaaaatttactatttaa 6771936  T
Q  376 agtccttaaag 386  Q
    |||||||||||    
T  6771937 agtccttaaag 6771947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 276 - 386
Target Start/End: Complemental strand, 5496076 - 5495969
Alignment:
Q  276 tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaa 375  Q
    ||||||||||  ||||||||||||||||| ||||||| ||||||||||| ||||| ||||| ||| ||||||||| || |||||||   ||| |||| ||    
T  5496076 tttaaggtttctcaattaagaaattattccttgaaaatgtttaacactttaattttcgatgcattgaatgcacaactttccataaa---ttactattcaa 5495980  T
Q  376 agtccttaaag 386  Q
    |||||||||||    
T  5495979 agtccttaaag 5495969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 244 - 376
Target Start/End: Original strand, 6775198 - 6775331
Alignment:
Q  244 agggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaa 342  Q
    ||||||||||||| |||||   | |||||||| ||||||||||  ||||||| ||||||||||||||||||  | |  | || ||||||||||| ||| |    
T  6775198 agggtcttgttaaggagtgtccttagggcactctttaaggtttctcaattaataaattattctttgaaaaatctcactatttgaatttccgatgcattga 6775297  T
Q  343 atgcacaatttcccataaaaatttattatttaaa 376  Q
    ||||||||||| ||||||| ||||| ||||||||    
T  6775298 atgcacaattttccataaatatttactatttaaa 6775331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 276 - 371
Target Start/End: Original strand, 41898254 - 41898349
Alignment:
Q  276 tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattat 371  Q
    ||||||| ||| ||||||||||| | ||| ||||||||||| || | |||||||||||||| |||||||| |||| || |||||| ||||||||||    
T  41898254 tttaaggattttcaattaagaaacttttcattgaaaaagttcaataattcaatttccgatgcattaaatgtacaagtttccataacaatttattat 41898349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 242 - 386
Target Start/End: Original strand, 3298184 - 3298328
Alignment:
Q  242 ttagggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtatt 340  Q
    ||||||||||| |||||||| | ||||||||||| |||||| |  || |||||||||| ||||| ||||||||| || | | ||||||||| |||| |||    
T  3298184 ttagggtcttgctaacgagtaccttaagggcactctttaagatactc-aattaagaaactattcattgaaaaagcttcatatttcaatttctgatgcatt 3298282  T
Q  341 aaatgcacaatttcccataaaaatttattatttaaagtccttaaag 386  Q
     |||||  || || |||||||||||||  || |||||| |||||||    
T  3298283 gaatgcttaagtttccataaaaatttaacatctaaagttcttaaag 3298328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 5248772 - 5248683
Alignment:
Q  244 agggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttcc 332  Q
    |||||||||||||||||  | ||||||||||| ||||||| || | ||| ||||||||||||||| |||| ||| || ||| ||||||||    
T  5248772 agggtcttgttaacgagccccttaagggcactctttaaggattcctaataaagaaattattctttaaaaatgttaaaaactccaatttcc 5248683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 31902785 - 31902745
Alignment:
Q  346 cacaatttcccataaaaatttattatttaaagtccttaaag 386  Q
    |||||||| ||||||||||||| ||||||||||||||||||    
T  31902785 cacaattttccataaaaatttactatttaaagtccttaaag 31902745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 332
Target Start/End: Complemental strand, 6388100 - 6388003
Alignment:
Q  236 ttattattagggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttcc 332  Q
    ||||| |||||||||||||||| ||||| || | | |||| ||||||| ||   ||| ||||||||||||||| |||||||  || ||||||||||||    
T  6388100 ttatttttagggtcttgttaacaagtgcctttaagacactctttaaggattcataataaagaaattattctttaaaaaagtcaaaaacttcaatttcc 6388003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 4e-43; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 276 - 397
Target Start/End: Complemental strand, 32438188 - 32438067
Alignment:
Q  276 tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaa 375  Q
    ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||    
T  32438188 tttaaggttttccaattaaaaaattattatttgaaaaggtttaacacttcaatttccgatgcattaaatgcacaattttccataaaaatttactatttaa 32438089  T
Q  376 agtccttaaagtatgccttaag 397  Q
    ||||||||||| |||| |||||    
T  32438088 agtccttaaagaatgcattaag 32438067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 276 - 386
Target Start/End: Complemental strand, 33963049 - 33962939
Alignment:
Q  276 tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaa 375  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| | ||| ||| ||||||||||||  ||||||||||||||||||||    
T  33963049 tttaaagttttccaattaagaaattattctttaaaaaagtttaacacttcaattttcaatgcattgaatgcacaatttttcataaaaatttattatttaa 33962950  T
Q  376 agtccttaaag 386  Q
    |||||||||||    
T  33962949 agtccttaaag 33962939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 250 - 378
Target Start/End: Original strand, 37597460 - 37597590
Alignment:
Q  250 ttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagttta-acacttcaatttccgatgtattaaatgca 347  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||    |  ||||||||||||| ||| ||||||||||    
T  37597460 ttgttaacgagtgctttaagggcactctttaaggtttcccaattaagaaattgttctttgaaaaaaaaaattcacttcaatttccaatgcattaaatgca 37597559  T
Q  348 caatttcccataaaaatttattatttaaagt 378  Q
    ||||||||||||||| |||||||||||||||    
T  37597560 caatttcccataaaattttattatttaaagt 37597590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 278 - 383
Target Start/End: Original strand, 18734354 - 18734459
Alignment:
Q  278 taaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaag 377  Q
    ||||||||  ||||||||||||||||| || |||||||||||||||||||||||||||  ||| ||||||||||||  |||||||||||| ||||| |||    
T  18734354 taaggtttctcaattaagaaattattccttaaaaaagtttaacacttcaatttccgatacattgaatgcacaatttttcataaaaatttactatttcaag 18734453  T
Q  378 tcctta 383  Q
    ||||||    
T  18734454 tcctta 18734459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 316 - 387
Target Start/End: Original strand, 7933334 - 7933405
Alignment:
Q  316 ttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaagt 387  Q
    ||||||||||||||||||||| ||| |||||| |||||  |||||||||||| |||||||||| ||||||||    
T  7933334 ttaacacttcaatttccgatgcattgaatgcataatttttcataaaaatttactatttaaagtacttaaagt 7933405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 372
Target Start/End: Original strand, 18684375 - 18684458
Alignment:
Q  289 aattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatt 372  Q
    ||||| ||| ||||||||| |||||||   ||| |||||||||| ||||||||||| ||||| ||  |||||||| ||||||||    
T  18684375 aattaggaagttattctttaaaaaagtcatacaattcaatttccaatgtattaaatacacaaattttcataaaaagttattatt 18684458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 276 - 350
Target Start/End: Complemental strand, 9153580 - 9153506
Alignment:
Q  276 tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaa 350  Q
    ||||||| || | ||||||||||||||||||| ||||||   ||||||||||||||| ||| ||| ||| |||||    
T  9153580 tttaaggattccaaattaagaaattattctttaaaaaaggcaaacacttcaatttccaatgcattgaatacacaa 9153506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 289 - 363
Target Start/End: Original strand, 32859798 - 32859872
Alignment:
Q  289 aattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaa 363  Q
    ||||| ||| ||||||||| |||||||  |||| |||||||||| ||||||||||| ||||| ||  ||||||||    
T  32859798 aattaggaagttattctttaaaaaagtcaaacagttcaatttccaatgtattaaatacacaagttttcataaaaa 32859872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 386
Target Start/End: Complemental strand, 32770863 - 32770766
Alignment:
Q  289 aattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 386  Q
    |||||||||||||||  ||||||||  |||| |||||||||||  ||| ||| |  ||| || || |||||||| |||| ||| ||||||||||||||    
T  32770863 aattaagaaattatttattgaaaaaacttaatacttcaatttcgaatgcattgaccgcataaatttccataaaattttactatctaaagtccttaaag 32770766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 4e-37; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 247 - 385
Target Start/End: Original strand, 3973783 - 3973922
Alignment:
Q  247 gtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatg 345  Q
    ||||||||||| |||||  |||| ||||| |||||||||| |||||||||||||||||| || |||||||| ||| ||||||||||||||| ||||||||    
T  3973783 gtcttgttaacaagtgccctaagagcactctttaaggtttcccaattaagaaattattccttaaaaaagttcaacgcttcaatttccgatgcattaaatg 3973882  T
Q  346 cacaatttcccataaaaatttattatttaaagtccttaaa 385  Q
    |||||||| ||||||||||||| ||||| |||||||||||    
T  3973883 cacaattttccataaaaatttactatttcaagtccttaaa 3973922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 247 - 385
Target Start/End: Complemental strand, 3996094 - 3995955
Alignment:
Q  247 gtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatg 345  Q
    ||||||||||| |||||  |||| ||||| |||||||||| ||||||||| |||||||| || |||||||| ||| ||||||||||||||| ||||||||    
T  3996094 gtcttgttaacaagtgccctaagagcactctttaaggtttcccaattaagcaattattccttaaaaaagttcaacgcttcaatttccgatgcattaaatg 3995995  T
Q  346 cacaatttcccataaaaatttattatttaaagtccttaaa 385  Q
    |||||||| ||||||||||||| ||||| |||||||||||    
T  3995994 cacaattttccataaaaatttactatttcaagtccttaaa 3995955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 247 - 385
Target Start/End: Complemental strand, 4009622 - 4009483
Alignment:
Q  247 gtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatg 345  Q
    ||||||||||| |||||  |||| ||||| |||||||||| |||||||||||||||||| || |||||||| ||| ||||||||||||||| ||||||||    
T  4009622 gtcttgttaacaagtgccctaagagcactctttaaggtttcccaattaagaaattattccttaaaaaagttcaacgcttcaatttccgatgcattaaatg 4009523  T
Q  346 cacaatttcccataaaaatttattatttaaagtccttaaa 385  Q
    |||||||| ||| ||||||||| ||||| | |||||||||    
T  4009522 cacaattttccacaaaaatttactatttcatgtccttaaa 4009483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 275 - 410
Target Start/End: Original strand, 49682166 - 49682301
Alignment:
Q  275 ttttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattattta 374  Q
    |||||||||||| ||||||| ||||||||| || ||||||||||||| |||||||||||| | ||| |||||||||||| | ||||||||||| ||||||    
T  49682166 ttttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactattta 49682265  T
Q  375 aagtccttaaagtatgccttaaggacattcgttaac 410  Q
    |||||||||||  || |  | |||||||||||||||    
T  49682266 aagtccttaaaaaatactcttaggacattcgttaac 49682301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 245 - 386
Target Start/End: Complemental strand, 21813290 - 21813152
Alignment:
Q  245 gggtcttgttaacgagtgctttaagggcacttttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaat 344  Q
    |||| ||||||||||||   || |||||||||||   ||||  ||||||||||||||||| ||||||||||||||||||| || |||||||| ||| |||    
T  21813290 gggttttgttaacgagtctcttcagggcactttt---gtttctcaattaagaaattattcattgaaaaagtttaacactttaaattccgatgcattgaat 21813194  T
Q  345 gcacaatttcccataaaaatttattatttaaagtccttaaag 386  Q
    ||| ||||| ||||||||||||| |||||||| |||||||||    
T  21813193 gcataattttccataaaaatttactatttaaaatccttaaag 21813152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 276 - 353
Target Start/End: Original strand, 31294370 - 31294447
Alignment:
Q  276 tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaattt 353  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||    
T  31294370 tttaaggttttctaattaagaaattattctttgaaaaagtttaacactttaatttccgatgcattgaatgcaccattt 31294447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 278 - 379
Target Start/End: Complemental strand, 32606486 - 32606385
Alignment:
Q  278 taaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaag 377  Q
    ||||||||| ||||||| |||||||  |||||||||  |||||| |||||||||||||| ||| |||||| |||||  ||||||||||||||||||||||    
T  32606486 taaggtttttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcattgaatgcataatttttcataaaaatttattatttaaag 32606387  T
Q  378 tc 379  Q
    ||    
T  32606386 tc 32606385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 289 - 386
Target Start/End: Original strand, 39144981 - 39145077
Alignment:
Q  289 aattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 386  Q
    |||||||||||| || ||| ||||| |||||||||||||||||||||| ||| |||||| ||||| | || |||||||||||||||||||| ||||||    
T  39144981 aattaagaaattgttttttaaaaaattttaacacttcaatttccgatgcattgaatgcataattttctat-aaaatttattatttaaagtctttaaag 39145077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 289 - 386
Target Start/End: Original strand, 29212713 - 29212810
Alignment:
Q  289 aattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 386  Q
    |||||||||| ||||| |||||||||| |||  |||||||||  |||||||| ||||||||| || | ||||||||||| ||| ||||||| ||||||    
T  29212713 aattaagaaactattcattgaaaaagtctaatgcttcaatttatgatgtattgaatgcacaagtttctataaaaatttaatatctaaagtctttaaag 29212810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 363
Target Start/End: Complemental strand, 29484943 - 29484855
Alignment:
Q  275 ttttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaa 363  Q
    ||||||| ||||| ||||||||||||||||||| ||||| | |||||||||||||| | ||  ||| ||| |||||||| | |||||||    
T  29484943 ttttaagattttctaattaagaaattattctttaaaaaaatctaacacttcaattttcaataaattgaatacacaattttctataaaaa 29484855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 378
Target Start/End: Original strand, 34285341 - 34285448
Alignment:
Q  268 agggcact-tttaaggttttccaattaagaaat-tattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatt 365  Q
    |||||||| ||||||| || |||||||| |||| |||||||| ||||||||||||||||||| ||||     ||||||||||||| ||   |||||||||    
T  34285341 agggcactctttaaggcttcccaattaaaaaatatattctttaaaaaagtttaacacttcaacttcc-----attaaatgcacaaatttttataaaaatt 34285435  T
Q  366 tattatttaaagt 378  Q
    || ||||||||||    
T  34285436 tactatttaaagt 34285448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 276 - 363
Target Start/End: Original strand, 36494175 - 36494263
Alignment:
Q  276 tttaaggttttccaattaagaaattattctttgaaaaagtt-taacacttcaatttccgatgtattaaatgcacaatttcccataaaaa 363  Q
    ||||||| || |||||||||||| ||||| ||||||||  | ||| |||||||||||| ||||||| ||||||||| || |||||||||    
T  36494175 tttaaggattcccaattaagaaactattcattgaaaaaaatctaatacttcaatttccaatgtattgaatgcacaagtttccataaaaa 36494263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 54290870 - 54290786
Alignment:
Q  289 aattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattattt 373  Q
    ||||| ||| ||||||||| |||||||  |||| |||||||||| ||||||||||| ||||| ||  ||||||||  ||||||||    
T  54290870 aattaggaagttattctttaaaaaagtcaaacagttcaatttccaatgtattaaatacacaagttttcataaaaagatattattt 54290786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 32734654 - 32734719
Alignment:
Q  250 ttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaag 314  Q
    ||||||||||||||  |||||||||| ||||||| || | ||| ||||||||||||||| ||||||    
T  32734654 ttgttaacgagtgccctaagggcactctttaaggattcctaataaagaaattattctttaaaaaag 32734719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 372
Target Start/End: Original strand, 43803992 - 43804065
Alignment:
Q  299 ttattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatt 372  Q
    ||||||||| |||||||  |||| |||||||||| ||||||||||| ||||| ||  |||||||| ||| ||||    
T  43803992 ttattctttaaaaaagtcaaacaattcaatttccaatgtattaaatacacaagttttcataaaaagttactatt 43804065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 266 - 410
Target Start/End: Complemental strand, 122582 - 122437
Alignment:
Q  266 taagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaat 364  Q
    |||||||||| |||||| |||  ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||     
T  122582 taagggcactctttaagatttctcaattaagaaattattctttgaaaaagtttaacactttaatttccgatgcattaaatgcacaattttccataaaaaa 122483  T
Q  365 ttattatttaaagtccttaaagtatgccttaaggacattcgttaac 410  Q
    ||| || ||||| ||||||||| ||||| ||| | || ||||||||    
T  122482 ttactacttaaaatccttaaagaatgccctaaaggcactcgttaac 122437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 3e-35; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 276 - 392
Target Start/End: Original strand, 38380458 - 38380574
Alignment:
Q  276 tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaa 375  Q
    ||||| |||| |||||||| ||||| ||||||||||||||||||||||||||||||||| | |||||||||| ||||| ||||||||||||| |||||||    
T  38380458 tttaaagtttcccaattaataaatttttctttgaaaaagtttaacacttcaatttccgaagcattaaatgcataattttccataaaaatttactatttaa 38380557  T
Q  376 agtccttaaagtatgcc 392  Q
    ||||||||||| |||||    
T  38380558 agtccttaaagaatgcc 38380574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 247 - 353
Target Start/End: Original strand, 31655473 - 31655580
Alignment:
Q  247 gtcttgttaacgagtgctttaagggcactttt-aaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatg 345  Q
    |||||||||||||||||  | ||||||||||| ||||||| |||||||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||    
T  31655473 gtcttgttaacgagtgcccttagggcactttttaaggtttcccaattaaaaaattattctttaaaaaagtttaacacttcaatatccgatgtattgaatg 31655572  T
Q  346 cacaattt 353  Q
    ||||||||    
T  31655573 cacaattt 31655580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 243 - 382
Target Start/End: Original strand, 32892977 - 32893117
Alignment:
Q  243 tagggtcttgttaacgagtgctttaagggcact--tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtatt 340  Q
    ||||||||| |||||||||| ||||||| ||||  ||||||||||| |||||||||| ||||| ||  ||||||||||||| |||||||| ||||| |||    
T  32892977 tagggtctt-ttaacgagtgttttaaggacactcttttaaggtttttcaattaagaatttatttttaaaaaaagtttaacatttcaattttcgatgcatt 32893075  T
Q  341 aaatgcacaatttcccataaaaatttattatttaaagtcctt 382  Q
     |||||||||||| | |||||| |||| ||||||||||||||    
T  32893076 gaatgcacaattttctataaaagtttactatttaaagtcctt 32893117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 276 - 386
Target Start/End: Complemental strand, 38949165 - 38949055
Alignment:
Q  276 tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaa 375  Q
    |||||| |||||||||||| ||||||||  || ||||| |||||||||||||||||||||| ||| ||||||||||||  |||||||||||| ||||| |    
T  38949165 tttaagattttccaattaaaaaattatttcttaaaaaaatttaacacttcaatttccgatgcattgaatgcacaatttttcataaaaatttactatttca 38949066  T
Q  376 agtccttaaag 386  Q
    |||||||||||    
T  38949065 agtccttaaag 38949055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 276 - 378
Target Start/End: Complemental strand, 39804993 - 39804890
Alignment:
Q  276 tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccat-aaaaatttattattta 374  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||  |||  ||||||||||||||||  ||| ||||||||| ||||||    
T  39804993 tttaaggttttccaattaaaaaattattatttgaaaaaatttaacacttcaatttttgatacattaaatgcacaatttttcataaaaaatttactattta 39804894  T
Q  375 aagt 378  Q
    ||||    
T  39804893 aagt 39804890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 288 - 362
Target Start/End: Complemental strand, 23133142 - 23133068
Alignment:
Q  288 caattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaa 362  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||| ||| ||| |||||||| | ||||||    
T  23133142 caattaagaaattattccttaaaaaagtttaacacttcaatttccgatgcattgaatacacaattttctataaaa 23133068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 50131028 - 50131113
Alignment:
Q  245 gggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaag--tttaacacttcaa 327  Q
    |||||||||||||||||||  | |||||| | |||||||||| ||||||||||||||||||||||||||||  |||||||||||||    
T  50131028 gggtcttgttaacgagtgccctgagggcattctttaaggtttcccaattaagaaattattctttgaaaaagtttttaacacttcaa 50131113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 317 - 378
Target Start/End: Complemental strand, 34469632 - 34469571
Alignment:
Q  317 taacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagt 378  Q
    ||||| |||||||||||||| ||||||||||||||||  |||||||||||||||||||||||    
T  34469632 taacatttcaatttccgatgcattaaatgcacaatttttcataaaaatttattatttaaagt 34469571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 287 - 385
Target Start/End: Original strand, 7388786 - 7388884
Alignment:
Q  287 ccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaa 385  Q
    |||||||||||| ||| | |||||||||| |||   | |||||||||||| ||||||||||||| || ||||||||||||| ||| |||||| ||||||    
T  7388786 ccaattaagaaaatatccattgaaaaagtctaatgttccaatttccgatgcattaaatgcacaagtttccataaaaatttactatctaaagttcttaaa 7388884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 245 - 342
Target Start/End: Original strand, 28695734 - 28695832
Alignment:
Q  245 gggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaa 342  Q
    |||||||||||||||||||  |||||||||| ||||||| || | ||| ||||||||||| ||| |||||||  || |||||||||||| |||||||||    
T  28695734 gggtcttgttaacgagtgccctaagggcactctttaaggattactaataaagaaattattttttaaaaaagtcaaaaacttcaatttccaatgtattaa 28695832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 49011965 - 49011880
Alignment:
Q  300 tattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaa 385  Q
    ||||| || ||||||||||| |||||||||| ||||| ||||||||||||| ||  || ||||| ||| |||||||||||||||||    
T  49011965 tattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcacaaaaacttactatttaaagtccttaaa 49011880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 55855175 - 55855255
Alignment:
Q  303 tctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 386  Q
    ||||| |||||||||||||||||||||| |||   ||||||| ||| ||||  |||||||||||||||||||||||||||||||    
T  55855175 tctttaaaaaagtttaacacttcaattttcgac--attaaat-cacgatttttcataaaaatttattatttaaagtccttaaag 55855255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 250 - 350
Target Start/End: Original strand, 40071282 - 40071383
Alignment:
Q  250 ttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcac 348  Q
    ||||||| ||||||| ||| | |||| ||||||| |||| |||||||||||||| | ||||||||||  || |||||||||||| | | ||| |||||||    
T  40071282 ttgttaatgagtgctctaatgacactctttaaggatttctaattaagaaattatgcattgaaaaagtccaatacttcaatttccaacgcattgaatgcac 40071381  T
Q  349 aa 350  Q
    ||    
T  40071382 aa 40071383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 372
Target Start/End: Original strand, 2063488 - 2063571
Alignment:
Q  289 aattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatt 372  Q
    ||||| ||| ||||||||| |||||||  |||| |||||||||| ||||||||||| ||||| ||  |||||||| ||| ||||    
T  2063488 aattaggaagttattctttaaaaaagtcaaacagttcaatttccaatgtattaaatacacaaattttcataaaaagttactatt 2063571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 244 - 373
Target Start/End: Complemental strand, 5143 - 5013
Alignment:
Q  244 agggtcttgttaacgagtgctttaagggcactttt-aaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaa 342  Q
    |||||||||||||| ||||| |||||  ||||||| ||||||| |||||||| ||||||||| || ||||||||||||| |||||||||| ||| ||| |    
T  5143 agggtcttgttaacaagtgccttaagaacactttttaaggtttcccaattaaaaaattattccttaaaaaagtttaacatttcaatttcccatgcattga 5044  T
Q  343 atgcacaatttcccataaaaatttattattt 373  Q
    ||||| ||||| ||||||||||||| |||||    
T  5043 atgcataattttccataaaaatttactattt 5013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 276 - 386
Target Start/End: Complemental strand, 29988433 - 29988325
Alignment:
Q  276 tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaa 375  Q
    ||||||||||  |||||||||||||||||||| ||||||| |||   ||||||||  |||||||| ||||  |||||| ||||||||||||| |||||||    
T  29988433 tttaaggtttctcaattaagaaattattctttaaaaaagtataat--ttcaatttttgatgtattgaatgttcaattttccataaaaatttactatttaa 29988336  T
Q  376 agtccttaaag 386  Q
    |||||||||||    
T  29988335 agtccttaaag 29988325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 29407967 - 29408042
Alignment:
Q  241 attagggtcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagt 315  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| || | ||| ||||||||||||||| |||||||    
T  29407967 attagggtcttgttaacgagtgccttaagggcactctttaaggattcctaataaagaaattattctttaaaaaagt 29408042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 386
Target Start/End: Complemental strand, 10571035 - 10570938
Alignment:
Q  289 aattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgcacaatttcccataaaaatttattatttaaagtccttaaag 386  Q
    |||||||||| ||||| ||||||| ||| || ||||||||||  |||| ||| |||| |||| || | ||||||||||| ||  ||||||| ||||||    
T  10571035 aattaagaaactattcattgaaaatgttcaatacttcaatttttgatgcattgaatgaacaaatttctataaaaatttactaaataaagtctttaaag 10570938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 248 - 363
Target Start/End: Original strand, 13436 - 13552
Alignment:
Q  248 tcttgttaacgagtgctttaagggcact-tttaaggttttccaattaagaaattattctttgaaaaagtttaacacttcaatttccgatgtattaaatgc 346  Q
    ||||| ||| ||||||  |||||||||| ||||| | || | |||||||||| ||||| |||||||||| ||| ||||||||||||||||  || |||||    
T  13436 tcttgctaatgagtgccctaagggcactctttaaagattcctaattaagaaactattcattgaaaaagtctaatacttcaatttccgatgctttgaatgc 13535  T
Q  347 acaatttcccataaaaa 363  Q
    |||| || |||||||||    
T  13536 acaagtttccataaaaa 13552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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