View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7981_low_2 (Length: 342)
Name: NF7981_low_2
Description: NF7981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7981_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 54 - 329
Target Start/End: Complemental strand, 35667784 - 35667509
Alignment:
| Q |
54 |
ctactctcatccttgaaatttatttatatatcaagtcatattatttttctataaagtctaatgtatttgatacaaaatttagaccaaaaacattttacat |
153 |
Q |
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| T |
35667784 |
ctactctcatccttgaaatttatttatatatcaagtcatattatttttctataaagtctaatgtatttgatacaaaatttagaacaaaaatattttacat |
35667685 |
T |
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| Q |
154 |
ttgaatatcaaaatagtgagcaacgatcctgatctgtaagaaaaattgtgtgttttagtttgatttttaagagagagaaaaatgcacgactctttgcttg |
253 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35667684 |
ttgaatatcaaaatagtgagtaacgatcctgatctgtaagaaaaattgtgggttttagtttgatttttaagagagagaaaaatgcacgactctttgcttg |
35667585 |
T |
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| Q |
254 |
aacatgatcggttctataagctcgtacaattgtatcctctatttataaggagagcataagcatgtcggagtattat |
329 |
Q |
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| T |
35667584 |
aacatgatcggttctataagctcgtacaattgtatcctctatttataaggagagcataagcatgttggagtattat |
35667509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 32052439 - 32052391
Alignment:
| Q |
106 |
aaagtctaatgtatttgatacaaaatttagaccaaaaacattttacattt |
155 |
Q |
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| T |
32052439 |
aaagtcaaatgtatttgat-ctaaatttagaccaaatacattttacattt |
32052391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 33653218 - 33653259
Alignment:
| Q |
107 |
aagtctaatgtatttgatacaaaatttagaccaaaaacattt |
148 |
Q |
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| T |
33653218 |
aagtctaatgtatttggtccaaaatttagaccaaacacattt |
33653259 |
T |
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