View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7981_low_8 (Length: 224)
Name: NF7981_low_8
Description: NF7981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7981_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 4872081 - 4872267
Alignment:
| Q |
17 |
agaaagcacattcttaggacaacacaaaagagaagaaacgcaagattgttggcatattggtagactatttctttttgacaaattcaataagctagtttat |
116 |
Q |
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| T |
4872081 |
agaaagctcattcttaggacaacacaaaagagaagaaacgcaagattgttggcatattggtagactatttctgtttgacaaattcaataagctagtttat |
4872180 |
T |
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| Q |
117 |
agtttataagtccgaatgattaaaaaatatatgattcataactgttttttcatcacaagttttatagtttattttattagtttgtag |
203 |
Q |
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| T |
4872181 |
agtttataagtccgaatgattaaaaaatgtatgtttcataactgttttttcatcactagttttatagtttattttattagtttgtag |
4872267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 4848717 - 4848903
Alignment:
| Q |
17 |
agaaagcacattcttaggacaacacaaaagagaagaaacgcaagattgttggcatattggtagactatttctttttgacaaattcaataagctagtttat |
116 |
Q |
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| T |
4848717 |
agaaagctcattcttaggacaacacaaaatggaagaaactcaagattgttggcatattggtagactatttctgtttgacaaattcaataatctagtttat |
4848816 |
T |
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| Q |
117 |
agtttataagtccgaatgattaaaaaatatatgattcataactgttttttcatcacaagttttatagtttattttattagtttgtag |
203 |
Q |
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| T |
4848817 |
agtttataagtccgaatgattaaaaaatatatgtttcataactgttttttcatcacaagttttatagtttattttattagtttgtag |
4848903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 4861824 - 4862013
Alignment:
| Q |
17 |
agaaagcacattcttaggacaacacaaaagagaagaaacgcaagattgttggcatattggtagactatttctttttgacaaattcaataagctagtttat |
116 |
Q |
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||||||| ||||||||||||||||||||| ||| | || |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
4861824 |
agaaagctcattcttaggacaacacaaaatggaaaacactcaagattgttggcatattggtagactatttctatctgacaaattcaataagctagtttat |
4861923 |
T |
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| Q |
117 |
agtttataagtccgaatgattaaaaaatatatgattcataactgttttttcatcacaagttttatagtttattttattagtttgtagctt |
206 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4861924 |
agtttataagtccgaatgattaaaaaatgtatgtttcataaccgttttttcatcacaagttttatagtttattttattagtttgtagctt |
4862013 |
T |
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