View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7982_low_2 (Length: 383)

Name: NF7982_low_2
Description: NF7982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7982_low_2
NF7982_low_2
[»] chr4 (6 HSPs)
chr4 (20-284)||(17278505-17278767)
chr4 (36-222)||(3462734-3462920)
chr4 (21-221)||(13602915-13603115)
chr4 (298-371)||(17278441-17278516)
chr4 (35-97)||(18618504-18618565)
chr4 (29-96)||(5506258-5506326)
[»] scaffold0004 (1 HSPs)
scaffold0004 (24-243)||(225575-225792)
[»] chr6 (5 HSPs)
chr6 (72-242)||(23143103-23143271)
chr6 (25-136)||(22724603-22724711)
chr6 (161-241)||(22337253-22337331)
chr6 (161-241)||(22266981-22267059)
chr6 (80-214)||(22885983-22886119)
[»] chr3 (4 HSPs)
chr3 (32-218)||(8815950-8816134)
chr3 (26-221)||(14800751-14800946)
chr3 (132-221)||(27173948-27174037)
chr3 (62-95)||(14753232-14753265)
[»] chr7 (5 HSPs)
chr7 (36-221)||(7229776-7229961)
chr7 (21-221)||(9634131-9634331)
chr7 (72-243)||(16177428-16177595)
chr7 (131-221)||(4567086-4567177)
chr7 (39-83)||(8835435-8835479)
[»] chr1 (4 HSPs)
chr1 (24-188)||(22586343-22586507)
chr1 (96-263)||(27240719-27240883)
chr1 (120-221)||(14981508-14981609)
chr1 (72-220)||(18895692-18895840)
[»] scaffold0023 (1 HSPs)
scaffold0023 (71-221)||(109415-109565)
[»] chr5 (1 HSPs)
chr5 (68-217)||(17349431-17349581)
[»] chr8 (4 HSPs)
chr8 (36-221)||(8989239-8989426)
chr8 (80-221)||(22471495-22471638)
chr8 (25-96)||(40545629-40545700)
chr8 (80-150)||(28914774-28914845)
[»] chr2 (2 HSPs)
chr2 (37-118)||(18371550-18371631)
chr2 (80-216)||(18830754-18830891)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 17278767 - 17278505
Alignment:
Q  20 attcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17278767 attcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcc 17278668  T
Q  120 tttgattcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttcc 219  Q
    || |||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||    
T  17278667 ttcgattcccaaatctttaatcctaaggaaccacacttccaccaatattcaattcctcttgaaattggagatcttctaggtctttgaaactcaagcttcc 17278568  T
Q  220 atatgcgatcccttgaattgcttcccacgaattcgtctttgctaggaaccaaccaggccaaacat 284  Q
      |||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  17278567 --atgcaatcccttgaattgcttcccgcgaattcgtctttgctaggaatcaaccaggccaaacat 17278505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 36 - 222
Target Start/End: Original strand, 3462734 - 3462920
Alignment:
Q  36 ctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttgattcccaaatct 135  Q
    |||||| |||||||||||||||||  || || ||| ||||||| |||||||||||||||||||||| |  || |||||||||||||  |||||| |||||    
T  3462734 ctcttcttgatagaaaatgtctctatcaaggacttccactatgttgaaaaatgtttacaaattgttatagttgcaaaagattccttcaattccctaatct 3462833  T
Q  136 ttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccata 222  Q
    | ||||||||||||| || || |||||| | ||||  |||| ||||||||||||| ||||||||| |||||||||||||||||||||    
T  3462834 tcaatcctaagcaaccacgctaccaccattcttcatttccttttgaaattggagagcctctaggttttcgaaactcaagcttccata 3462920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 13602915 - 13603115
Alignment:
Q  21 ttcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcct 120  Q
    |||||| ||| ||| |||||| ||||||||||  ||| |  || || ||| ||||||| ||||||||||||||||||||||  |||||||||||||||||    
T  13602915 ttcaggatacctccactcttcttgatagaaaacatctttatcaaggacttccactatgttgaaaaatgtttacaaattgttaagattacaaaagattcct 13603014  T
Q  121 ttgattcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttcca 220  Q
    | |||  || ||| || |||| | |||||| |||   |||||||| ||||||| ||||| |||||||| || ||||  || |||||||||||||| ||||    
T  13603015 tcgataacccaattttcaatcttgagcaaccacaacaccaccaatcttcaagtactcttaaaattggaaattctcttagttttcgaaactcaagcatcca 13603114  T
Q  221 t 221  Q
    |    
T  13603115 t 13603115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 298 - 371
Target Start/End: Complemental strand, 17278516 - 17278441
Alignment:
Q  298 caggccaaatataagggcataaaggataaatgaatcaattcaagggttttgaag--atttttgattcgaatcaaca 371  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||  |||||| |||||||||||||    
T  17278516 caggccaaacataagggtataaaggataattgaatcaattcaagggttttgaagatattttttattcgaatcaaca 17278441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 18618504 - 18618565
Alignment:
Q  35 tctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaat 97  Q
    |||||||||||||||||||| || |  ||||| |||||||||||||| |||||||||||||||    
T  18618504 tctcttcgtgatagaaaatgcctatatcacgggctttcactatgatg-aaaatgtttacaaat 18618565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 5506258 - 5506326
Alignment:
Q  29 acatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgat-gaaaaatgtttacaaa 96  Q
    ||||| |||||||||||||||||| ||||||  |  |||||| |||||||||  |||||||||||||||    
T  5506258 acatcatctcttcgtgatagaaaaagtctctatccaggtcttccactatgataaaaaaatgtttacaaa 5506326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 24 - 243
Target Start/End: Complemental strand, 225792 - 225575
Alignment:
Q  24 agggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttg 123  Q
    |||||||||||  | ||| |||||||||| ||||||  || || ||||||||||| |||||||||||  ||||||||| ||||||||||||||| |||||    
T  225792 agggtacatccattattcttgatagaaaacgtctctatcaaggactttcactatgttgaaaaatgttagcaaattgttatgattacaaaagatttctttg 225693  T
Q  124 attcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccatat 223  Q
    |||||| |||||| ||||||||||||| ||||| |||||||| |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||  |     
T  225692 attccctaatcttcaatcctaagcaaccacactaccaccaatcttcaagtcctcttgaaattggagagcctttaggtcttcgaaactaaagcttcc--ac 225595  T
Q  224 gcgatcccttgaattgcttc 243  Q
    || |||||||||||||||||    
T  225594 gcaatcccttgaattgcttc 225575  T

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Target: chr6 (Bit Score: 104; Significance: 9e-52; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 72 - 242
Target Start/End: Original strand, 23143103 - 23143271
Alignment:
Q  72 cactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttgattcccaaatctttaatcctaagcaacaacacttccaccaatattcaa 171  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||| ||| |||||| |||||| ||||||||||||| ||||| |||||||| |||||    
T  23143103 cactatgttgaaaaatgtttacaaattgttatgattacaaaagattctttttattccctaatcttcaatcctaagcaaccacactaccaccaatcttcaa 23143202  T
Q  172 gtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccatatgcgatcccttgaattgctt 242  Q
    ||||||||||||||||||| |||||| |||||||||||||||| ||||  |||| |||||||||| |||||    
T  23143203 gtcctcttgaaattggagagcctctaagtcttcgaaactcaagtttcc--atgcaatcccttgaactgctt 23143271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 22724711 - 22724603
Alignment:
Q  25 gggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttga 124  Q
    |||||||||||||| || ||||| |||||||||||  ||||||||| |||| |||| |||||||||||||| |   | |||||||||| |||||||| ||    
T  22724711 gggtacatcctctcatcttgatataaaatgtctctatcacggtcttccactctgataaaaaatgtttacaagtg--tatgattacaaa-gattccttcga 22724615  T
Q  125 ttcccaaatctt 136  Q
    ||||| ||||||    
T  22724614 ttccctaatctt 22724603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 22337331 - 22337253
Alignment:
Q  161 ccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccatatgcgatcccttgaattgct 241  Q
    ||||| ||||||||||| |||||||| | | || | ||||||||||| |||||||||||  |||| |||||||||||||||    
T  22337331 ccaatcttcaagtcctcatgaaattgaacagccacaaggtcttcgaatctcaagcttcc--atgcaatcccttgaattgct 22337253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 22267059 - 22266981
Alignment:
Q  161 ccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccatatgcgatcccttgaattgct 241  Q
    ||||| ||||||||||||||||| || | |  | | ||||||||||| |||||||||||  |||| |||||||||||||||    
T  22267059 ccaatcttcaagtcctcttgaaactgaacagtcacaaggtcttcgaatctcaagcttcc--atgcaatcccttgaattgct 22266981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 214
Target Start/End: Complemental strand, 22886119 - 22885983
Alignment:
Q  80 tgaaaaatgtttacaaattgttgtgattacaaaagattcctttgatt-cccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctc- 177  Q
    |||||| |||||| |||||||| ||||||||||  ||||| | |||  ||| |||||| ||||||||||||  |||   ||||| || ||||||| | |     
T  22886119 tgaaaattgtttagaaattgttatgattacaaataattccctcgataaccctaatcttcaatcctaagcaatcacaacaccaccgatcttcaagtacccg 22886020  T
Q  178 ttgaaattggagatcctctaggtcttcgaaactcaag 214  Q
    ||||||||||||||  |||| || |||||||||||||    
T  22886019 ttgaaattggagattttctaagttttcgaaactcaag 22885983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 8815950 - 8816134
Alignment:
Q  32 tcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttgattcccaa 131  Q
    ||||||||||||||||||||| ||||||  |||| |||| || |  |||||||||| |||||||||||||||||||||||||||||||||||||||   |    
T  8815950 tcctctcttcgtgatagaaaacgtctctaccacgatcttccatt--gatgaaaaatatttacaaattgttgtgattacaaaagattcctttgattctgta 8816047  T
Q  132 atctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttc 218  Q
     |||| ||||||||||||| ||||| |||| ||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||    
T  8816048 gtcttcaatcctaagcaaccacactaccactaatattcaagttctcttgaaattggagagcctgtaggtcttcgaaactcaagcttc 8816134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 14800946 - 14800751
Alignment:
Q  26 ggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttgat 125  Q
    ||||| ||| |||||| |||| ||||| ||||||  || |  ||| ||||||| |||||||| ||||||||||||| || ||||||||||||||||||||    
T  14800946 ggtacctccactcttcttgattgaaaacgtctctatcaagaacttccactatgttgaaaaatatttacaaattgttatggttacaaaagattcctttgat 14800847  T
Q  126 tcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccat 221  Q
      || |||||| ||||||||  |||||||   |||||||| ||||||| |||||||||||||| || |   | |||||| ||||||||||||||||    
T  14800846 aacctaatcttcaatcctaataaacaacaacaccaccaatcttcaagtactcttgaaattggaaattccacaagtcttcaaaactcaagcttccat 14800751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 27174037 - 27173948
Alignment:
Q  132 atctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccat 221  Q
    ||||| |||| |||| ||| ||||  |||||||| ||||||| |||||||||||||| ||  | || ||||| |||||||||||||||||    
T  27174037 atcttcaatcataagaaaccacaccaccaccaatcttcaagtactcttgaaattggaaattttataagtctttgaaactcaagcttccat 27173948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 95
Target Start/End: Original strand, 14753232 - 14753265
Alignment:
Q  62 cacggtctttcactatgatgaaaaatgtttacaa 95  Q
    ||||||||| ||||||||||||||||||||||||    
T  14753232 cacggtcttccactatgatgaaaaatgtttacaa 14753265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 7229776 - 7229961
Alignment:
Q  36 ctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttgattcccaaatct 135  Q
    |||||| |||||||| || |||||  || || ||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||| |    
T  7229776 ctcttcttgatagaatatctctctatcaaggacttccactatgttgaaaaatgtttacaaattgttatgattacaaaagattccttcgataccctaattt 7229875  T
Q  136 ttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccat 221  Q
    |  |||||||||||| ||    | | |||| ||||||| |||||||||||| | | |||||||||||||||||||||||| |||||    
T  7229876 tctatcctaagcaaccacgacactagcaatcttcaagttctcttgaaattgaaaagcctctaggtcttcgaaactcaagcctccat 7229961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 9634331 - 9634131
Alignment:
Q  21 ttcagggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcct 120  Q
    |||||| ||| ||| |||||| ||||||||||  ||| |  || || ||| ||||||| ||||||||||||||||||||||  |||||||||||||||||    
T  9634331 ttcaggatacctccactcttcttgatagaaaacatctttatcaaggacttccactatgttgaaaaatgtttacaaattgttaagattacaaaagattcct 9634232  T
Q  121 ttgattcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttcca 220  Q
    | |||  || ||| || |||| | |||||| |||   |||||||| ||||||| ||||| |||||||| || ||||  || |||||||||||||| ||||    
T  9634231 tcgataacccaattttcaatcttgagcaaccacaacaccaccaatcttcaagtactcttaaaattggaaattctcttagttttcgaaactcaagcatcca 9634132  T
Q  221 t 221  Q
    |    
T  9634131 t 9634131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 72 - 243
Target Start/End: Complemental strand, 16177595 - 16177428
Alignment:
Q  72 cactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttgattcccaaatctttaatcctaagcaacaacacttccaccaatattcaa 171  Q
    |||||||||||||||||  |||||  |||| ||||||||||||||||| | ||||| | |||||| ||||||||||||  ||||| | || |||   |||    
T  16177595 cactatgatgaaaaatggatacaa--tgttatgattacaaaagattccatcgattctctaatcttcaatcctaagcaatcacactacaactaatccccaa 16177498  T
Q  172 gtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccatatgcgatcccttgaattgcttc 243  Q
    ||||||||| ||||||||| ||||  |  |||| |||||||||||||   |||| |||||||||||| ||||    
T  16177497 gtcctcttgtaattggagagcctcatgaccttcaaaactcaagcttc--aatgcaatcccttgaattacttc 16177428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 4567177 - 4567086
Alignment:
Q  131 aatctttaatcctaagcaacaacacttccaccaatattcaagtcctc-ttgaaattggagatcctctaggtcttcgaaactcaagcttccat 221  Q
    |||||| || |||||||||| |||   |||||||| |||||||  || |||||||||||||| ||| | |||||||||||||||||| ||||    
T  4567177 aatcttcaaccctaagcaaccacaacaccaccaatcttcaagtagtccttgaaattggagattctccaagtcttcgaaactcaagctcccat 4567086  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 8835479 - 8835435
Alignment:
Q  39 ttcgtgatagaaaatgtctctgacacggtctttcactatgatgaa 83  Q
    ||||||||| |||||||||||  |||||||||||| |||||||||    
T  8835479 ttcgtgataaaaaatgtctctatcacggtctttcattatgatgaa 8835435  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 22586343 - 22586507
Alignment:
Q  24 agggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttg 123  Q
    ||||||||||| |||||| |||||||||| ||||||  ||    ||| ||||||| || |||||||||||||||| || ||||||||||||||||||| |    
T  22586343 agggtacatccactcttcttgatagaaaaagtctctagcaaatacttccactatgttggaaaatgtttacaaattattatgattacaaaagattccttcg 22586442  T
Q  124 attcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattgga 188  Q
    |||||| ||||||||||||||||  || ||||| ||| |||| ||   |||||||||||||||||    
T  22586443 attccctaatctttaatcctaagagaccacactaccaacaatctttttgtcctcttgaaattgga 22586507  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 96 - 263
Target Start/End: Complemental strand, 27240883 - 27240719
Alignment:
Q  96 attgttgtgattacaaaagattcctttgattcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctc 195  Q
    |||||| ||||||| ||||||||||| ||||||| || ||| ||||||||| ||| ||||| |||||||| |||| || |||||||||||||||| |  |    
T  27240883 attgttatgattaccaaagattccttcgattccctaaacttcaatcctaagtaaccacactaccaccaatcttcatgtgctcttgaaattggagagc--c 27240786  T
Q  196 taggtcttcgaaactcaagcttccatatgcgatcccttgaattgcttccca-cgaattcgtctttgcta 263  Q
    ||||||||| |||||||| |||||  |||| |||||||||||| |||| ||  |||||||| |||||||    
T  27240785 taggtcttcaaaactcaaacttcc--atgcaatcccttgaatttcttcacagtgaattcgtatttgcta 27240719  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 14981609 - 14981508
Alignment:
Q  120 tttgattcccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttcc 219  Q
    |||||||||| |||||| ||||||  || || ||||| |||| ||| |||||||||||||||||||||||| |||||||||||||||  |||||||||||    
T  14981609 tttgattccctaatcttcaatcctttgctaccacactaccactaatcttcaagtcctcttgaaattggagagcctctaggtcttcgattctcaagcttcc 14981510  T
Q  220 at 221  Q
    ||    
T  14981509 at 14981508  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 72 - 220
Target Start/End: Original strand, 18895692 - 18895840
Alignment:
Q  72 cactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttgattcccaaatctttaatcctaagcaacaacacttccaccaatattcaa 171  Q
    ||||||| ||||||||| ||||||||| || ||||||||||| |||| || |||   | |||||| ||||||||||||| |||   |||||||| |||||    
T  18895692 cactatgttgaaaaatgcttacaaatttttatgattacaaaatattcattcgataagctaatcttcaatcctaagcaaccacaacaccaccaatcttcaa 18895791  T
Q  172 gtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttcca 220  Q
    || ||||||||||| || |||||  | ||||| |||||||||| |||||    
T  18895792 gtactcttgaaatttgaaatccttcaagtctttgaaactcaagtttcca 18895840  T

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Target: scaffold0023 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 71 - 221
Target Start/End: Original strand, 109415 - 109565
Alignment:
Q  71 tcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattcctttgattcccaaatctttaatcctaagcaacaacacttccaccaatattca 170  Q
    ||||||||||||||||||| ||||||| ||| |||||| | |||||| | |  |||||| |||||| |||||  || ||| ||||| |||||||| ||||    
T  109415 tcactatgatgaaaaatgtctacaaatcgttatgattatagaagatttcgtcaattccctaatcttcaatcccgagaaaccacactaccaccaatcttca 109514  T
Q  171 agtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccat 221  Q
    |||||||||||||||  ||| ||||||| ||| |||| |||||||||||||    
T  109515 agtcctcttgaaatttcagagcctctagatctacgaatctcaagcttccat 109565  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 68 - 217
Target Start/End: Complemental strand, 17349581 - 17349431
Alignment:
Q  68 ctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattccttt--gattcccaaatctttaatcctaagcaacaacacttccaccaat 165  Q
    ||||||||||||||||||||||||||||||| || ||||||||||   ||  ||   ||||| | ||||||||| |||||||||| ||||| ||||||||    
T  17349581 ctttcactatgatgaaaaatgtttacaaatttttatgattacaaatttttttttgtcgattctctaatctttaaccctaagcaactacactaccaccaat 17349482  T
Q  166 attcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagctt 217  Q
     |||||||| |||||||||   ||| ||| |||||||||| |||||||||||    
T  17349481 cttcaagtcatcttgaaatat-agagcctataggtcttcgtaactcaagctt 17349431  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 8989426 - 8989239
Alignment:
Q  36 ctcttcgtgatagaaaatgtctctgacacggtctttcactatgat-gaaaaatgtttacaaattgttgtgattacaaaagattcctttgatt-cccaaat 133  Q
    |||||| ||||||||||  |||||  || || ||| |||||| || ||||||| ||||||||||||| ||||||||||| ||||| | ||   ||| |||    
T  8989426 ctcttcttgatagaaaacttctctatcaaggacttccactattattgaaaaatatttacaaattgttatgattacaaaatattccatcgaaaaccctaat 8989327  T
Q  134 ctttaatcctaagcaacaacacttccaccaatattcaagtcctcttgaaattggagatcctctaggtcttcgaaactcaagcttccat 221  Q
    ||| ||||| ||||||| |||   | |||||| ||||||  |||||||||||||| || ||||| |||||||||||||||||| ||||    
T  8989326 cttcaatcccaagcaaccacaacacaaccaatcttcaagaactcttgaaattggaaattctctaagtcttcgaaactcaagctcccat 8989239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 22471495 - 22471638
Alignment:
Q  80 tgaaaaatgtttacaaattgttgtgattacaaaagattcctttgat-tcccaaatctttaatcctaagcaacaacacttccaccaatattcaagt-cctc 177  Q
    |||||||| || |||||||||| ||||||||||||||||| | |||  ||| |||||| | || |||||||| ||| | |||||||| ||||| |  |||    
T  22471495 tgaaaaatattcacaaattgttatgattacaaaagattccctcgataaccctaatcttcagtcataagcaaccacaataccaccaatcttcaactatctc 22471594  T
Q  178 ttgaaattggagatcctctaggtcttcgaaactcaagcttccat 221  Q
    ||||||||||| || ||||| ||||| |||||||||||| ||||    
T  22471595 ttgaaattggaaattctctaagtctttgaaactcaagctcccat 22471638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 40545700 - 40545629
Alignment:
Q  25 gggtacatcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaa 96  Q
    |||||| |||| |||||||||||||||| ||||||  || ||| || |||||||||||||||||||||||||    
T  40545700 gggtacgtcctttcttcgtgatagaaaacgtctctatcatggttttccactatgatgaaaaatgtttacaaa 40545629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 28914774 - 28914845
Alignment:
Q  80 tgaaaaatgtttacaaattgttgtgattacaaaagattcctttgat-tcccaaatctttaatcctaagcaac 150  Q
    |||||||||||||||||||||| |||||||||||||||   |||||  ||| |||||| |||||||||||||    
T  28914774 tgaaaaatgtttacaaattgttatgattacaaaagattttcttgataaccctaatcttcaatcctaagcaac 28914845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 18371631 - 18371550
Alignment:
Q  37 tcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaaattgttgtgattacaaaagattc 118  Q
    ||||| || ||||||||||||||  || || ||| ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  18371631 tcttcttgttagaaaatgtctctatcaaggacttccactatgttgaaaaatgtttacaaattgttatgattacaaaagattc 18371550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 216
Target Start/End: Original strand, 18830754 - 18830891
Alignment:
Q  80 tgaaaaatgtttacaaattgttgtgattacaaaagattcctttgatt-cccaaatctttaatcctaagcaacaacacttccaccaatattcaagtcctct 178  Q
    ||||||||||||||||| |||| |||||| | |||||||||| |||  ||| |||||| ||||||||||||| |||   |||||||| ||||||  ||||    
T  18830754 tgaaaaatgtttacaaactgttatgattatagaagattccttcgataaccctaatcttcaatcctaagcaactacaacaccaccaatcttcaagaactct 18830853  T
Q  179 tgaaattggagatcctctaggtcttcgaaactcaagct 216  Q
    |||||||||| || ||||| || || |||| |||||||    
T  18830854 tgaaattggaaattctctaagtttttgaaattcaagct 18830891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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