View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7982_low_4 (Length: 269)
Name: NF7982_low_4
Description: NF7982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7982_low_4 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0079 (1 HSPs) |
| | |
|
| [»] scaffold0013 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 17279149 - 17278896
Alignment:
| Q |
16 |
gttaatacgattcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaa |
115 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17279149 |
gttaatatgattcaaagctgaattgagaggttcaaataatgaatcttatggagcatatcaacaatcaatacaaatacattcgaattgcaaaactaaacaa |
17279050 |
T |
|
| Q |
116 |
tctcaaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatcatttccttgaagcttactttcaacttgattgtgatg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17279049 |
tctcaaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacatggtatatgaatcatttccttgaagcttactttcaacttgattgtgatg |
17278950 |
T |
|
| Q |
216 |
aaattgaatttgaaataatctcaactgaaataattgagattaggttaagtaaac |
269 |
Q |
| |
|
||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17278949 |
aaactgaatttgaaaaaatctcaactgaagtaattgagattaggttaagtaaac |
17278896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 25 - 264
Target Start/End: Original strand, 13602554 - 13602793
Alignment:
| Q |
25 |
attcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatctcaaacc |
124 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| | |||| |||| ||||| ||||||| |||||| | ||||| ||||||||||||||||||| | |
|
|
| T |
13602554 |
attcaaagctgaattgagaggttcaaataatgagttttattgagcaaatcaattatcaatattcatacataccaattgcaaaactaaacaatctcaaatc |
13602653 |
T |
|
| Q |
125 |
aaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatcatttccttgaagcttactttcaacttgattgtgatgaaattgaat |
224 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| |||||||||||| ||||||| | | | |||||| |||| || | |||||| |||| |||||||||| |
|
|
| T |
13602654 |
aaacctattaaaaacaaatcacactaacaactaatgaacacaagatatatgatttaatagcttgaaacttatttgaaccttgatcgtgacgaaattgaat |
13602753 |
T |
|
| Q |
225 |
ttgaaataatctcaactgaaataattgagattaggttaag |
264 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||||||||| |
|
|
| T |
13602754 |
ttgaaagaatctcaattgaagtaattgagattaggttaag |
13602793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 3462348 - 3462544
Alignment:
| Q |
19 |
aatacgattcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatct |
118 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||| ||||| ||||||||| ||||| |
|
|
| T |
3462348 |
aataagatttaaaggtgaattgagaggttcaaataatgaatcttatggagcatatcaacaattaatacacatacattcaaattgcaaaactaaaaaatct |
3462447 |
T |
|
| Q |
119 |
caaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatca--tttccttgaagcttactttcaacttgattgtga |
213 |
Q |
| |
|
||||||||||||||||| || |||||||||| | ||| | |||||||||| |||||||||| ||| ||| |||||||||| ||||||||||||| |
|
|
| T |
3462448 |
caaaccaaacctattaataaaaaatcacactgacaactattgaacacaagacatatgaatcaattttgtttgtagcttactttaaacttgattgtga |
3462544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 5505949 - 5506077
Alignment:
| Q |
98 |
aattgaaaaactaaacaatctcaaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatcatttccttgaagcttact |
197 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| ||| ||| |||| |||||||||||| || || ||||||| | ||| |
|
|
| T |
5505949 |
aattgcaaaactaaacaatctcaaaccaaacttattaacaacaaagcacactaacaactaataaacataaggtatatgaaacaattgcttgaagttcact |
5506048 |
T |
|
| Q |
198 |
ttcaactt-gattgtgatgaaattgaatt |
225 |
Q |
| |
|
|||||||| ||||||||| |||||||||| |
|
|
| T |
5506049 |
ttcaacttggattgtgattaaattgaatt |
5506077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 17503786 - 17503886
Alignment:
| Q |
104 |
aaaactaaacaatctcaaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatcatttccttgaagcttactttcaac |
203 |
Q |
| |
|
|||||||||| | | |||| |||| ||||||||| |||||||||||| ||| |||||| |||| ||||||||||| | ||||| |||||||||||| |
|
|
| T |
17503786 |
aaaactaaactaacacaaataaaacatattaacaataaatcacactaacaactaatgaatacaa-atatatgaatcaaatgtttgaaccttactttcaac |
17503884 |
T |
|
| Q |
204 |
tt |
205 |
Q |
| |
|
|| |
|
|
| T |
17503885 |
tt |
17503886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 25 - 264
Target Start/End: Complemental strand, 9634692 - 9634453
Alignment:
| Q |
25 |
attcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatctcaaacc |
124 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| | |||| |||| ||||| ||||||| |||||| | ||||| ||||||||||||||||||| | |
|
|
| T |
9634692 |
attcaaagctgaattgagaggttcaaataatgagttttattgagcaaatcaattatcaatattcatacataccaattgcaaaactaaacaatctcaaatc |
9634593 |
T |
|
| Q |
125 |
aaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatcatttccttgaagcttactttcaacttgattgtgatgaaattgaat |
224 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| |||||||||||| ||||||| | | | |||||| |||| || | |||||| |||| |||||||||| |
|
|
| T |
9634592 |
aaacctattaaaaacaaatcacactaacaactaatgaacacaagatatatgatttaatagcttgaaacttatttgaaccttgatcgtgacgaaattgaat |
9634493 |
T |
|
| Q |
225 |
ttgaaataatctcaactgaaataattgagattaggttaag |
264 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||||||||| |
|
|
| T |
9634492 |
ttgaaagaatctcaattgaagtaattgagattaggttaag |
9634453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 265
Target Start/End: Original strand, 21935432 - 21935671
Alignment:
| Q |
24 |
gattcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatctcaaac |
123 |
Q |
| |
|
|||| ||||||||| ||||| ||| |||| |||||||||| ||||| ||||| ||||||| | ||| | ||||| |||||||||||| || || | |
|
|
| T |
21935432 |
gatttaaagatgaaatgagaagtttaaatcttgaatcttattaagcaaatcaaatatcaatattcaagcatacaaattgcaaaactaaacaaacttaa-c |
21935530 |
T |
|
| Q |
124 |
caaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatcatttccttgaagcttactttcaacttgattgtgatgaaattgaa |
223 |
Q |
| |
|
|||||| ||| ||| |||||||||||| ||| |||||||||| ||||||||||||| | ||||| |||| || | |||||||| || |||||||| |
|
|
| T |
21935531 |
aaaacct-ttagcaataaatcacactaacaactaatgaacacatggtatatgaatcaatggtttgaaacttaattgaattttgattgtaataaaattgaa |
21935629 |
T |
|
| Q |
224 |
tttgaaataatctcaactgaaataattgagattaggttaagt |
265 |
Q |
| |
|
||||||| |||||||| |||| |||||||||||||||||||| |
|
|
| T |
21935630 |
tttgaaagaatctcaattgaagtaattgagattaggttaagt |
21935671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 16192175 - 16191981
Alignment:
| Q |
19 |
aatacgattcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatct |
118 |
Q |
| |
|
|||| |||||||| ||||||| || ||||||| ||| ||||||||| |||| |||| |||||||||| ||||||| ||||| |||||||||| || | |
|
|
| T |
16192175 |
aataagattcaaatgtgaattgtgaagttcaaagaatcaatcttatggagcaaatcattaatcaatacacatacatttaaattgcaaaactaaactattt |
16192076 |
T |
|
| Q |
119 |
caaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatc-atttccttgaagcttactttcaacttgattgtga |
213 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||| | | |||||||||||| ||||||||| |||| |||||| |||| |||||| ||||||||| |
|
|
| T |
16192075 |
caaaccaaacctattaacaaaaaaacaccttaatacctaatgaacacaagacatatgaatcaatttatttgaagattaccttcaac-tgattgtga |
16191981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 209
Target Start/End: Complemental strand, 16177990 - 16177833
Alignment:
| Q |
45 |
gttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatctcaaaccaaacctattaacaacaaatc |
144 |
Q |
| |
|
|||||||||||||||| |||| || | ||||||||| |||||||||||| || || ||| || |||| |||||||| |||||| ||||||||| |
|
|
| T |
16177990 |
gttcaaataatgaatcctatggagaaaatcaacaatgaatacaaatacagtc--------aagctagactatcttaaaccaaatctattaccaacaaatc |
16177899 |
T |
|
| Q |
145 |
acactaaaaaccaatgaacacaaggtatatgaatc-atttccttgaagcttactttcaacttgatt |
209 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
16177898 |
ccactaacaactaatgaacacaaggcatatgaatcaatttgtttgaagcttagtttcaacttgatt |
16177833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 162
Target Start/End: Complemental strand, 17857161 - 17857029
Alignment:
| Q |
34 |
tgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatac------attcgaattgaaaaactaaacaatctcaaaccaaa |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||| | ||||||| |||| |||| |||| || ||||||| |||||||||||| |
|
|
| T |
17857161 |
tgaattgagaggttcaaataatgaatcttatggagcaaatcaata--caatacacatactttcaaattccaattccaatactaaactatctcaaaccaac |
17857064 |
T |
|
| Q |
128 |
cctattaacaacaaatcacactaaaaaccaatgaa |
162 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| |
|
|
| T |
17857063 |
cctattaacaacaaatcacactaacaactaatgaa |
17857029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 21585435 - 21585505
Alignment:
| Q |
104 |
aaaactaaacaatctcaaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatat |
174 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||| |||||||||| | ||| || ||||||||||||||| |
|
|
| T |
21585435 |
aaaactaaactatctaaaaccaaacctattaacaataaatcacactcacaactaacgaacacaaggtatat |
21585505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 8835794 - 8835733
Alignment:
| Q |
105 |
aaactaaacaatctcaaaccaaacctattaacaacaaatcacactaaaaaccaatgaacaca |
166 |
Q |
| |
|
||||||||||||| |||| | |||||||||| || |||||||||||| || |||||||||| |
|
|
| T |
8835794 |
aaactaaacaatcacaaatccaacctattaataataaatcacactaactacaaatgaacaca |
8835733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 226161 - 225966
Alignment:
| Q |
19 |
aatacgattcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatct |
118 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||| | ||||||| |||| ||||| |||||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
226161 |
aataagattcaaaaatgaattgagaggttcaaataattagtcttatggagcaaatcaataatcaatacagatacattcaaatcccaaaactaaacaatct |
226062 |
T |
|
| Q |
119 |
caaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatca-tttccttgaagcttactttcaacttgattgtga |
213 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||| |||||||| ||| |||||||| | ||| |||||||||||||| ||| |||||||| |
|
|
| T |
226061 |
caaatcaaacctattaacaacaaatcacactaacaactaatgaacagaagacatatgaattactttgtttgaagcttactttaaacaagattgtga |
225966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 22585977 - 22586172
Alignment:
| Q |
19 |
aatacgattcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatct |
118 |
Q |
| |
|
|||| ||||||||| ||||||||||| |||||||||||||||||||| || | ||||| ||| |||||| |||||| | |||| |||||||||||||||| |
|
|
| T |
22585977 |
aataagattcaaagttgaattgagagcttcaaataatgaatcttatggagtaaatcaataattaatacacatacatacaaatttaaaaactaaacaatct |
22586076 |
T |
|
| Q |
119 |
caaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatca-tttccttgaagcttactttcaacttgattgtga |
213 |
Q |
| |
|
|||||||||| |||||| |||||||||||| || ||| ||||||||||||| |||||||| | ||| |||||||| ||||| |||| |||||||| |
|
|
| T |
22586077 |
caaaccaaacttattaataacaaatcacaccaacaactaatgaacacaaggcatatgaattactttgtttgaagctgactttaaactagattgtga |
22586172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 27272267 - 27272125
Alignment:
| Q |
25 |
attcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatctcaaacc |
124 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| || ||||| |||||||||| || ||||| |||| ||||||||||||||||| ||| |
|
|
| T |
27272267 |
attcaaagctgaattgagaggttcaaataatgaatcttatgaaacaaatcaataatcaatacacatgcattcaaatttcaaaactaaacaatctcacacc |
27272168 |
T |
|
| Q |
125 |
aaacctattaacaacaaatcacactaaaaaccaatgaacacaa |
167 |
Q |
| |
|
||||| ||||||||||||||| ||| | ||| | ||||||||| |
|
|
| T |
27272167 |
aaacccattaacaacaaatcatactcacaactattgaacacaa |
27272125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 98 - 205
Target Start/End: Complemental strand, 16887239 - 16887131
Alignment:
| Q |
98 |
aattgaaaaactaaacaatctcaaaccaaacctattaa-caacaaatcacactaaaaaccaatgaacacaaggtatatgaatcatttccttgaagcttac |
196 |
Q |
| |
|
||||||||||||||| ||||||||| ||| ||||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||| |||||| | || |
|
|
| T |
16887239 |
aattgaaaaactaaagtatctcaaacgaaatctattaatcaataaatcacactaacaactaatgaacacaaggtatatgaatcatttatttgaagttaac |
16887140 |
T |
|
| Q |
197 |
tttcaactt |
205 |
Q |
| |
|
||||||||| |
|
|
| T |
16887139 |
tttcaactt |
16887131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 268
Target Start/End: Original strand, 18895270 - 18895511
Alignment:
| Q |
24 |
gattcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatctcaaac |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| ||| |||||| | ||||| ||||| ||||||||| |||| |
|
|
| T |
18895270 |
gattcaaagatgaattgagaggttcaaataatgaatcttatatagcaagtcaataatca--acacatacatccaaattgcaaaaccaaacaatcttaaac |
18895367 |
T |
|
| Q |
124 |
caaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatc-atttccttgaagcttactttcaacttgattgtgatgaaattga |
222 |
Q |
| |
|
|||| ||| |||||| || | ||||| | | || ||||||||| ||||||||| | || |||| | |||||| ||||||||||||| |||| | |
|
|
| T |
18895368 |
caaaactaataacaattaagaaaactaacaccaaaggaacacaagacatatgaatcaacttgtttgacgattacttgaaacttgattgtga--gaattta |
18895465 |
T |
|
| Q |
223 |
atttgaaataatctcaactgaaataattgagattaggttaagtaaa |
268 |
Q |
| |
|
| |||||| ||||| || |||| |||||||||||| || ||||||| |
|
|
| T |
18895466 |
aattgaaagaatcttaattgaagtaattgagattaagtaaagtaaa |
18895511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 49331168 - 49331241
Alignment:
| Q |
104 |
aaaactaaacaatctcaaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaa |
177 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| |||||||| |||||| | | ||| ||||| |||||||||| |
|
|
| T |
49331168 |
aaaactaaactatcacaaaccaaacctattaataacaaatcccactaacagctaataaacacggggtatatgaa |
49331241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 30984881 - 30984942
Alignment:
| Q |
24 |
gattcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaata |
85 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||| | ||||| ||||| ||||||| |
|
|
| T |
30984881 |
gattcaaagttgaattgagaggttcaaatgttgaatctttttaagcacatcaaatatcaata |
30984942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 263
Target Start/End: Original strand, 16291 - 16527
Alignment:
| Q |
24 |
gattcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatctcaaac |
123 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||||||| ||| | ||||||||||||||| | ||| | ||||| |||||||||| ||||||||| |
|
|
| T |
16291 |
gattcaaaagtgaattgagaggttaaaa-aatgaatcttataaagaaattcaacaatcaatacaca--catacaaattgcaaaactaaactatctcaaac |
16387 |
T |
|
| Q |
124 |
caaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatcatttccttgaagcttactttcaac-ttgattgtgatgaaattga |
222 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| |||||||| ||||||||||||||| | ||||||||||| ||| ||| |||||||||| ||||| |
|
|
| T |
16388 |
taaacctagtaacaacaaatcacactaacaactaatgaacaaaaggtatatgaatcaactgcttgaagcttatttttaactttgattgtgagataattg- |
16486 |
T |
|
| Q |
223 |
atttgaaataatctcaactgaaataattgagattaggttaa |
263 |
Q |
| |
|
||||| || |||||||| |||| |||||||||||||||||| |
|
|
| T |
16487 |
atttgtaagaatctcaattgaagtaattgagattaggttaa |
16527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 24 - 265
Target Start/End: Complemental strand, 21872801 - 21872561
Alignment:
| Q |
24 |
gattcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatctcaaac |
123 |
Q |
| |
|
||||||||| | |||||||||||||||||| |||||||||| | | | ||||| ||||| | | ||| | ||||| |||||||||||||||||||| |
|
|
| T |
21872801 |
gattcaaagtttaattgagaggttcaaatattgaatcttatta-gtaaatcaaatatcaaaattcaatcatacaaattgcaaaactaaacaatctcaaac |
21872703 |
T |
|
| Q |
124 |
caaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatcatttccttgaagcttactttcaacttgattgtgatgaaattgaa |
223 |
Q |
| |
|
|||||| ||||||| |||||||||||| || |||||||||||| ||||||||||| | ||| || |||| || | |||||||||||| |||||||| |
|
|
| T |
21872702 |
aaaaccttttaacaataaatcacactaacaagtaatgaacacaagatatatgaatcaatggcttaaaacttatttgaaccttgattgtgataaaattgaa |
21872603 |
T |
|
| Q |
224 |
tttgaaataatctcaactgaaataattgagattaggttaagt |
265 |
Q |
| |
|
||||||| ||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
21872602 |
tttgaaagaatttcaattgacataattgagattaggttaagt |
21872561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 98 - 265
Target Start/End: Original strand, 18830392 - 18830559
Alignment:
| Q |
98 |
aattgaaaaactaaacaatctcaaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatcatttccttgaagcttact |
197 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||||||| ||| |||||||| || ||| |||||||||||||||||||||||| | |||| |||| | |
|
|
| T |
18830392 |
aattgcaaaactaaacaaactcaaactaaacctattagcaataaatcacataaacaactaatgaacacaaggtatatgaatcaatggtttgagacttaat |
18830491 |
T |
|
| Q |
198 |
ttcaacttgattgtgatgaaattgaatttgaaataatctcaactgaaataattgagattaggttaagt |
265 |
Q |
| |
|
| | |||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
18830492 |
tgaaccttgattgtgataaaattgaatttgaaagaatctcaactgaagtaattgagattaggctaagt |
18830559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 27180854 - 27180650
Alignment:
| Q |
24 |
gattcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatctcaaac |
123 |
Q |
| |
|
||||||||| ||||||||| |||||||||| | |||||||| |||| ||||| ||||||| | ||| | |||| ||||| ||||||||| |||| |
|
|
| T |
27180854 |
gattcaaagttgaattgagtggttcaaatattaaatcttattaagcgcatcaaatatcaatattcaagcatacaaatttcaaaac-aaacaatctgaaac |
27180756 |
T |
|
| Q |
124 |
caaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatcatttccttgaagcttactttcaacttgattgtgatgaaattgaa |
223 |
Q |
| |
|
|||||||||| |||||||||||||| || || ||||||||||||||||| |||||| | ||||| |||| || | |||||||||||| |||||||| |
|
|
| T |
27180755 |
caaacctatttgcaacaaatcacact-aacactaatgaacacaaggtataagaatcaatggtttgaaacttaattgaagcttgattgtgataaaattgaa |
27180657 |
T |
|
| Q |
224 |
tttgaaa |
230 |
Q |
| |
|
||||||| |
|
|
| T |
27180656 |
tttgaaa |
27180650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 27830396 - 27830192
Alignment:
| Q |
24 |
gattcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatctcaaac |
123 |
Q |
| |
|
||||||||| ||||||||| |||||||||| | |||||||| |||| ||||| ||||||| | ||| | |||| ||||| ||||||||| |||| |
|
|
| T |
27830396 |
gattcaaagttgaattgagtggttcaaatattaaatcttattaagcgcatcaaatatcaatattcaagcatacaaatttcaaaac-aaacaatctgaaac |
27830298 |
T |
|
| Q |
124 |
caaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatcatttccttgaagcttactttcaacttgattgtgatgaaattgaa |
223 |
Q |
| |
|
|||||||||| |||||||||||||| || || ||||||||||||||||| |||||| | ||||| |||| || | |||||||||||| |||||||| |
|
|
| T |
27830297 |
caaacctatttgcaacaaatcacact-aacactaatgaacacaaggtataagaatcaatggtttgaaacttaattgaagcttgattgtgataaaattgaa |
27830199 |
T |
|
| Q |
224 |
tttgaaa |
230 |
Q |
| |
|
||||||| |
|
|
| T |
27830198 |
tttgaaa |
27830192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 29801444 - 29801358
Alignment:
| Q |
91 |
acattcgaattgaaaaactaaacaatctcaaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaa |
177 |
Q |
| |
|
|||||| ||||| |||| ||||| ||||||||||||||||||||| || |||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
29801444 |
acattcaaattgcaaaattaaactatctcaaaccaaacctattaagaataaatcacactaacaactaatgaacacaaggtatatgaa |
29801358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 18372010 - 18371906
Alignment:
| Q |
34 |
tgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatctcaaaccaaacctatt |
133 |
Q |
| |
|
|||||||| | ||||||||||||||||||| ||| | ||||| ||||||| |||||| | ||||||||||||||||||||||||| |||||||| |
|
|
| T |
18372010 |
tgaattgataagttcaaataatgaatcttaagaacaaaatcaattatcaatattcatacatacaaattgaaaaactaaacaatctcaaattgaacctatt |
18371911 |
T |
|
| Q |
134 |
aacaa |
138 |
Q |
| |
|
||||| |
|
|
| T |
18371910 |
aacaa |
18371906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 225
Target Start/End: Complemental strand, 29799377 - 29799257
Alignment:
| Q |
107 |
actaaacaatctcaaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatc-atttccttgaagcttactttcaac-t |
204 |
Q |
| |
|
||||||| || ||||||| ||||||||||||| ||| | ||||| ||| ||||||||| | ||||||||| | |||| |||||| ||||||||||| | |
|
|
| T |
29799377 |
actaaactatatcaaaccgaacctattaacaataaactatactaacaactaatgaacacgaagtatatgaagcaatttgtttgaagtttactttcaactt |
29799278 |
T |
|
| Q |
205 |
tgattgtgatgaaattgaatt |
225 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
29799277 |
tgattgtgataaaattgaatt |
29799257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 23469937 - 23469870
Alignment:
| Q |
110 |
aaacaatctcaaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaa |
177 |
Q |
| |
|
|||| ||||||||||||| ||||||||| |||||||||||| || |||||||| |||||||||||| |
|
|
| T |
23469937 |
aaactatctcaaaccaaaattattaacaataaatcacactaacgacaaatgaacataaggtatatgaa |
23469870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 24 - 268
Target Start/End: Complemental strand, 17350000 - 17349759
Alignment:
| Q |
24 |
gattcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatctcaaac |
123 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| |||||| ||| | |||||||||||||||| | | || | | || |||||||||| || | ||| |
|
|
| T |
17350000 |
gattcaaaggtgaattgagaagttcaaataatgactcttataaagaaaatcaacaatcaatacacacatatacaagttccaaaactaaactattt-aaat |
17349902 |
T |
|
| Q |
124 |
caaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatc-atttccttgaagcttactttcaacttgattgtgatgaaattga |
222 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| ||||||||||||| || |||||| |||| |||||||||||||||||||||||||||| |||| | |
|
|
| T |
17349901 |
caaacctatttacaacaaatcacactaacaactaatgaacacaaggcatgtgaatcaatttgtatgaagcttactttcaacttgattgtgat--aattaa |
17349804 |
T |
|
| Q |
223 |
atttgaaataatctcaactgaaataattgagattaggttaagtaaa |
268 |
Q |
| |
|
|||| | || |||||| | || ||||||||||||||| ||||||| |
|
|
| T |
17349803 |
attt-agattctctcaattaaattaattgagattaggtgaagtaaa |
17349759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 265
Target Start/End: Original strand, 22471060 - 22471300
Alignment:
| Q |
24 |
gattcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatctcaaac |
123 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||||| ||||| ||||| ||||||| | || | ||||| ||||||||||||||||||| |
|
|
| T |
22471060 |
gattcaaagctgaattgagattttcaaatattgaatcttattaagcaaatcaaatatcaatattcaagtatacaaattgcaaaactaaacaatctcaaat |
22471159 |
T |
|
| Q |
124 |
caaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatcatttccttgaagcttactttcaacttgattgtgatgaaattgaa |
223 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| ||| |||||||||||||||| ||| | ||||| |||| || | | ||| |||||| ||| |||| |
|
|
| T |
22471160 |
caaacctattaacaataaatcacactaacaactaat-aacacaaggtatatgagtcagtggtttgaaacttaattgaaccctgactgtgataaaaatgaa |
22471258 |
T |
|
| Q |
224 |
tttgaaataatctcaactgaaataattgagattaggttaagt |
265 |
Q |
| |
|
||||||| ||| |||| |||| |||||||||||||||||||| |
|
|
| T |
22471259 |
tttgaaagaatttcaattgaagtaattgagattaggttaagt |
22471300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 265
Target Start/End: Complemental strand, 8989810 - 8989577
Alignment:
| Q |
34 |
tgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatctcaaaccaaacctatt |
133 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| | || || || |||| | ||| | |||| |||||||||||||||||||||||||||||| |
|
|
| T |
8989810 |
tgaattgagaggttcaaatattgaatcttattaagaaaataaaatataaatattcaagcatacaaatttcaaaactaaacaatctcaaaccaaacctatt |
8989711 |
T |
|
| Q |
134 |
aacaacaaatcacactaaaaaccaatgaacacaaggtata--tgaatcatttccttgaagcttactttcaacttgattgtgatgaaattgaatttgaaat |
231 |
Q |
| |
|
|| || ||||||||||| |||| |||||||| ||||||| ||||||| | ||||| |||| || | |||||| ||||| || || ||||||||| |
|
|
| T |
8989710 |
aataataaatcacactataaactaatgaacaagaggtatatttgaatcaatgatttgaaacttaattgaaccttgatcgtgataaagtttaatttgaaag |
8989611 |
T |
|
| Q |
232 |
aatctcaactgaaataattgagattaggttaagt |
265 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||||| |
|
|
| T |
8989610 |
aatcacaattgaagtaattgagattaggttaagt |
8989577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 265
Target Start/End: Original strand, 28914419 - 28914579
Alignment:
| Q |
104 |
aaaactaaacaatctcaaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatcatttccttgaagcttactttcaac |
203 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| |||||||||| || || ||| |||||||||||||||||| | | |||||||||| || | | |
|
|
| T |
28914419 |
aaaactaaacaatctcaatccaaacctatttgcaataaatcacact-aacactaataaacacaaggtatatgaattaatagtttgaagcttaattgaagc |
28914517 |
T |
|
| Q |
204 |
ttgattgtgatgaaattgaatttgaaataatctcaactgaaataattgagattaggttaagt |
265 |
Q |
| |
|
||||||||||| |||| |||||||||| ||||| || | || ||||| |||||||||||||| |
|
|
| T |
28914518 |
ttgattgtgataaaatggaatttgaaagaatcttaattcaagtaattaagattaggttaagt |
28914579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 260
Target Start/End: Complemental strand, 40545987 - 40545842
Alignment:
| Q |
115 |
atctcaaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatcatttccttgaagcttactttcaactt-gattgtga |
213 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | | | | |||| ||||| ||||||||||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
40545987 |
atctcaaaccaaacctattaacaataaatcacattgacagctaatggacacacggtatatgaatcaattgtttaaagcttactttcaacttcgattgtga |
40545888 |
T |
|
| Q |
214 |
tgaaattgaatttgaaataatctcaactgaaataattgagattaggt |
260 |
Q |
| |
|
||||||| || ||| |||||||| |||| |||| |||||||||| |
|
|
| T |
40545887 |
gataattgaa-ttaaaagaatctcaattgaagtaatcgagattaggt |
40545842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 16722386 - 16722313
Alignment:
| Q |
104 |
aaaactaaacaatctcaaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaa |
177 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
16722386 |
aaaactaaagtatctcaaatcaaacctattaacaataaatcatactaaaaactaatgaacacaaggtatatgaa |
16722313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 23142420 - 23142551
Alignment:
| Q |
19 |
aatacgattcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatct |
118 |
Q |
| |
|
|||| ||||||||| |||||||| | |||||||||| |||||||||| |||| ||||| ||||||| | |||| ||| |||| ||||||||| ||||| |
|
|
| T |
23142420 |
aataagattcaaagttgaattgacaagttcaaataacgaatcttatggagcaaatcaatcatcaataaagatacgttcaaattctaaaactaaaaaatct |
23142519 |
T |
|
| Q |
119 |
caaaccaaacctattaacaacaaatcacacta |
150 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |
|
|
| T |
23142520 |
caaaccaaacttattaacaacaaatcacacta |
23142551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 225
Target Start/End: Complemental strand, 22725019 - 22724885
Alignment:
| Q |
91 |
acattcgaattgaaaaactaaacaatctcaaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaatcatttccttgaa |
190 |
Q |
| |
|
|||||| ||||| |||||||||| ||||||||||||| |||||| ||| |||||||||||| || | |||||||||||||||||||| || || ||||| |
|
|
| T |
22725019 |
acattcaaattgcaaaactaaactatctcaaaccaaaactattatcaataaatcacactaacaa-ctatgaacacaaggtatatgaagcaattgtttgaa |
22724921 |
T |
|
| Q |
191 |
gcttactttcaac-ttgattgtgatgaaattgaatt |
225 |
Q |
| |
|
| | ||||||||| |||||||||| |||||||||| |
|
|
| T |
22724920 |
gttaactttcaactttgattgtgagaaaattgaatt |
22724885 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 22337772 - 22337698
Alignment:
| Q |
104 |
aaaactaaacaatctcaaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaat |
178 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||| ||| |||| ||||| ||||||||| |
|
|
| T |
22337772 |
aaaactaaacaatctcaaaccaaacacgttaacaacaaattacactaactaccgatgattacaagatatatgaat |
22337698 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 6341 - 6415
Alignment:
| Q |
189 |
aagcttactttcaacttgattgtgatgaaattgaatttgaaataatctcaactgaaataattgagattaggttaa |
263 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| ||||||||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
6341 |
aagcttattttcaacttgattgtgaggaaattaaatttgaaagaatctcaattgaagtaattgagattaggttaa |
6415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 6198 - 6330
Alignment:
| Q |
19 |
aatacgattcaaagatgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatct |
118 |
Q |
| |
|
|||| ||||||||| | ||||||||| || ||||||||||||||| | || | ||||| ||| |||||| |||||| |||| ||||||| ||||| |
|
|
| T |
6198 |
aataagattcaaagctaaattgagagatttaaataatgaatcttacggaggaaatcaataattaatacacatacatataaattccaaaactactaaatct |
6297 |
T |
|
| Q |
119 |
caaaccaaacctattaacaacaaatcacactaa |
151 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
6298 |
caaaccaaacccattaacaacaaatcacactaa |
6330 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 138
Target Start/End: Complemental strand, 14801306 - 14801207
Alignment:
| Q |
33 |
atgaattgagaggttcaaataatgaatcttatgaagcatatcaacaatcaatacaaatacattcgaattgaaaaactaaacaatctcaaaccaaacctat |
132 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || |||| |||||| ||| ||||| | ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
14801306 |
atgaattgcgaggttcaaataatgaatcttatatag----tcaataatcaacaca--tacatccaaattgcaaaacgaaacaatctcaaaccaaacctat |
14801213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 8815898 - 8815938
Alignment:
| Q |
25 |
attcaaagatgaattgagaggttcaaataatgaatcttatg |
65 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8815898 |
attcaaagctgaattgagaggttcaaataatgaatcttatg |
8815938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 21486795 - 21486863
Alignment:
| Q |
109 |
taaacaatctcaaaccaaacctattaacaacaaatcacactaaaaaccaatgaacacaaggtatatgaa |
177 |
Q |
| |
|
||||| || |||||| ||||||||||| || |||| ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
21486795 |
taaactatatcaaactaaacctattaataataaataacactaacaactaatgaacacaaggtatatgaa |
21486863 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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