View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7982_low_5 (Length: 235)
Name: NF7982_low_5
Description: NF7982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7982_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 32248495 - 32248290
Alignment:
| Q |
18 |
gtaggaggagatggaatgttgtccttattgagaagaggtttggaacttcccttcaatgaggtaatgtagaagttgcttcnnnnnnnataagtcttttttg |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32248495 |
gtagaaggagatggaatgttgtccttattgagaagaggtttggaatttcccttcaatgaggtaatgtagaagttgcttctttttttataagtcttttttg |
32248396 |
T |
|
| Q |
118 |
atgtaacatct---tggtgaaggaaatgcttttgagcatgactagcaacttgacttgcagttcttgtacgaacatgttgtgaaatctttttccaatttcc |
214 |
Q |
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||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32248395 |
atgtaccatctaattggtgaaggaaatgcttttgagcatggctagcaacttgacttgcagttcttgtacgaacatgttgtgaaatcattttccaatttcc |
32248296 |
T |
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| Q |
215 |
cttctt |
220 |
Q |
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|||||| |
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| T |
32248295 |
cttctt |
32248290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 32236301 - 32236098
Alignment:
| Q |
18 |
gtaggaggagatggaatgttgtccttattgagaagaggtttggaacttcccttcaatgaggtaatgtagaagttgcttcnnnnnnnataagtcttttttg |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32236301 |
gtagaaggagatggaatgttgtccttattgagaagaggtttggaatttcccttcaatgaggtaatgtagaagttgcttctttttttataagtcttttttg |
32236202 |
T |
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| Q |
118 |
atgtaacatct---tggtgaaggaaatgcttttgagcatgactagcaacttgacttgcagttcttgtacgaacatgttgtgaaatctttttccaatttcc |
214 |
Q |
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||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
32236201 |
atgtaccatctaattggtgaaggaaatgcttttgagcatggctagcaacttgacttgcagttcttgtacgaacatgttgtgaaatcagtttccactttcc |
32236102 |
T |
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| Q |
215 |
cttc |
218 |
Q |
| |
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|||| |
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| T |
32236101 |
cttc |
32236098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 32254685 - 32254509
Alignment:
| Q |
20 |
aggaggagatggaatgttgtccttattgagaagaggtttggaacttcccttcaatgaggtaatgtagaagttgcttcnnnnnnnataagtcttttttgat |
119 |
Q |
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|||||| ||||||||||||||||||| ||||||||| |||||| ||| |||||||||||||||| ||||||||| | ||| ||||||||| |
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| T |
32254685 |
aggaggggatggaatgttgtccttatagagaagagggttggaatctccattcaatgaggtaatgtcaaagttgctt---tttcttttagttttttttgat |
32254589 |
T |
|
| Q |
120 |
gtaacatcttggtgaaggaaatgcttttgagcatgactagcaacttgacttgcagttcttgtacgaacatgttgtgaaat |
199 |
Q |
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||| || || |||||||||||||||||| |||| ||| |||||||||||| |||| |||||| || ||||| |||||| |
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| T |
32254588 |
gtagcactatgatgaaggaaatgcttttgatcatggctaccaacttgacttggagtttttgtactaagatgttctgaaat |
32254509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 37027805 - 37027885
Alignment:
| Q |
137 |
gaaatgcttttgagcatgactagcaacttgacttgcagttcttgtacgaacatgttgtgaaatctttttccaatttccctt |
217 |
Q |
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|||||||||||||||||| |||||||||||| ||| |||| |||||| ||||||||||| ||||||| |||| |||||||| |
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| T |
37027805 |
gaaatgcttttgagcatggctagcaacttgagttgtagtttttgtaccaacatgttgtgcaatctttatccattttccctt |
37027885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 23193803 - 23193760
Alignment:
| Q |
128 |
ttggtgaaggaaatgcttttgagcatgactagcaacttgacttg |
171 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
23193803 |
ttggtgaaggaaagtcttttgagcatggctagcaacttgacttg |
23193760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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