View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7982_low_6 (Length: 226)
Name: NF7982_low_6
Description: NF7982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7982_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 44146751 - 44146940
Alignment:
| Q |
13 |
ataaaaaataaagaagtcattatggtgttctaaacacgttgnnnnnnntgcttatcatccataatccattagattgtattattaactcggaattgagaag |
112 |
Q |
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| T |
44146751 |
ataagaaataaagaagtcattatggtgttctaaacacgttgaaaaaaatgcttatcatccataatccattagattgtat-attaactcggaattgagaag |
44146849 |
T |
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| Q |
113 |
gaagtggccttcctatattatatcttttgatatccaaacaggtcaataagaattccaagtttatacaaaaaatagagctaaatatcagttt |
203 |
Q |
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| T |
44146850 |
gaagtggccttcctatattatatcttttgatatccaaacaggtcaataagaattccaagtttatacaaaaaatagagctaaatatcagttt |
44146940 |
T |
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Target: chr4; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 40896307 - 40896499
Alignment:
| Q |
13 |
ataaaaaataaagaagtcattatggtgttctaaacacgttgnnnnnnntgcttat--catccataatccattagattgtattattaactcggaattgaga |
110 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40896307 |
ataataaatagagaagtcattatggtgttctaaacacgttgaaaaaaatgcttatatcatccataatccattagattgtattattaactcggaattgaga |
40896406 |
T |
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| Q |
111 |
aggaagtggccttcctatattatatcttttgatatccaaacaggtcaataagaattccaagtttatacaaaaaatagagctaaatatcagttt |
203 |
Q |
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| T |
40896407 |
aggaagtggccttcctatattatatcttttgatatccaaacaggtcaaaaagaattccaagtttatacaaaaaatagagctaaatatcagttt |
40896499 |
T |
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