View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7983_high_6 (Length: 352)
Name: NF7983_high_6
Description: NF7983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7983_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 7814892 - 7814559
Alignment:
| Q |
1 |
acaagcaagcaatcaaacatactactcagcaaacctttttaattgaaagaatttgaagcttgggagaatggcagagcagttgtactacttgatcccaatt |
100 |
Q |
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| T |
7814892 |
acaagcaaacaaacaaatatactactcagaaaacctttttaattgaaagaatttgaagcttgggagaatggcagagcagttgtactacttgatcccaatt |
7814793 |
T |
|
| Q |
101 |
atgattctgaaatgagtactgagttaacaacaggtcaatatgaattaagtttgaaaacacttgaattacttcgatagaatcctcttgatataggattaca |
200 |
Q |
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| T |
7814792 |
atgattatgaaatgagtaaggagaaaacaacaggtcaatatgaattaagtttgaaaacacttgaatgacttggatagaatccttttgatttatgattacc |
7814693 |
T |
|
| Q |
201 |
cgtagaaacttgacatttttaatgagattaaggtcagcatctgccacatcgatactagctccaacgaatttaggtaaggccaaggatttcaacccttcgg |
300 |
Q |
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| T |
7814692 |
cgtagaaacttgatatttttaatgagattaaagtgagcatctgccatgtcaatactagctccaaccaatttaggtaaggccaaggatttcaacccttcag |
7814593 |
T |
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| Q |
301 |
atgtgttgtttcgaccaggtttcctagaacggac |
334 |
Q |
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| T |
7814592 |
atgtgttgtttcgaccaggtttcctagtacggac |
7814559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 3255129 - 3255213
Alignment:
| Q |
20 |
tactactcagcaaacctttttaattgaaagaatttgaagcttgggagaatggcagagcagttgtactacttgatcccaattatga |
104 |
Q |
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| T |
3255129 |
tactactcaacaaacctttttaataaaaagaatttgaagattgggagaatggcggagaagttctactacacaatcccaattatga |
3255213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 14435811 - 14435875
Alignment:
| Q |
6 |
caagcaatcaaacatactactcagcaaacctttttaattgaaagaatttgaagcttgggagaatg |
70 |
Q |
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| T |
14435811 |
caagcaaacaaatatattactcagcaaacctttttaatgaaaagaatttgaagcatgggacaatg |
14435875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 7806063 - 7806118
Alignment:
| Q |
33 |
acctttttaattgaaagaatttgaagcttgggagaatggcagagcagttgtactac |
88 |
Q |
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| T |
7806063 |
acctttttaatgaaaagaatttgaagcttgggacaatggcggagcagttttactac |
7806118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 7872116 - 7872059
Alignment:
| Q |
21 |
actactcagcaaacctttttaattgaaagaatttgaagcttgggagaatggcagagca |
78 |
Q |
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| T |
7872116 |
actactcaacatacctttttaataataagaatttgaagcttgggacaatggcggagca |
7872059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 14438480 - 14438536
Alignment:
| Q |
14 |
caaacatactactcagcaaacctttttaattgaaagaatttgaagcttgggagaatg |
70 |
Q |
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| T |
14438480 |
caaatatattactcaacaaaccttattaatataaagaatttgaagcttgggacaatg |
14438536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 37996815 - 37996874
Alignment:
| Q |
4 |
agcaagcaatcaaacatactactcagcaaacctttttaattgaaagaatttgaagcttgg |
63 |
Q |
| |
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||||| ||| ||||||||||||||| ||||||||| |||| ||||||||||||||||||| |
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| T |
37996815 |
agcaaacaaacaaacatactactcaacaaacctttctaatagaaagaatttgaagcttgg |
37996874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 37996940 - 37996994
Alignment:
| Q |
135 |
tcaatatgaattaagtttgaaaacacttgaattacttcgatagaatcctcttgat |
189 |
Q |
| |
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| T |
37996940 |
tcaatatgaattaagtttggaaacactggaatgactttgaaagaagcctcttgat |
37996994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 2467742 - 2467824
Alignment:
| Q |
6 |
caagcaatcaaacatactactcagcaaacctttttaattgaaagaatttgaagcttgggagaatggcagagcagttgtactac |
88 |
Q |
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| T |
2467742 |
caagcaaacaaatatattactcaacaaacctttctaataaaaacaatttgaagcttgcgacagtggcagagcagttctactac |
2467824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 14018530 - 14018469
Alignment:
| Q |
20 |
tactactcagcaaacctttttaattgaaagaatttgaagcttgggagaatggcagagcagtt |
81 |
Q |
| |
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||||||||| |||||||||||||| |||||||||| ||| | |||||||||| |||||||| |
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| T |
14018530 |
tactactcaacaaacctttttaataaaaagaatttggagccttggagaatggcggagcagtt |
14018469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 22621003 - 22620965
Alignment:
| Q |
32 |
aacctttttaattgaaagaatttgaagcttgggagaatg |
70 |
Q |
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| T |
22621003 |
aacctttctaattaaaagaatttgaagcttgggagaatg |
22620965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 24005178 - 24005239
Alignment:
| Q |
6 |
caagcaatcaaacatactactc--agcaaacctttttaattgaaagaatttgaagcttggga |
65 |
Q |
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||||||| |||||||||||||| | ||||||||| |||| |||||||||||||||||||| |
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| T |
24005178 |
caagcaaacaaacatactactctcaacaaacctttctaataaaaagaatttgaagcttggga |
24005239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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