View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7983_high_9 (Length: 317)
Name: NF7983_high_9
Description: NF7983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7983_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 301
Target Start/End: Original strand, 29918532 - 29918821
Alignment:
| Q |
12 |
tggacatcaataggtgtgagaaaatggnnnnnnntttgaatcttgatttatattactaattctctaactgaannnnnnnataatttcatagatcacagca |
111 |
Q |
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| T |
29918532 |
tggacataaataggtgtgagaaaatggaaaataatttgaatcttgatttatattactaattctctaactgaatttttttataatttcatagatcacagca |
29918631 |
T |
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| Q |
112 |
gcaatttcaaaagtttagtacttagtacctgaattatgccagcatggtcaccccttgagtgctcaggcgaagtgttcaaccaagtccctggccaatgaga |
211 |
Q |
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| T |
29918632 |
gcaatttcaaaagtttagtacttagtacctgaattatgccagcatggtcaccccttgagtgctcaggcgaagtgttcaaccaagtccctggccaatgaga |
29918731 |
T |
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| Q |
212 |
tccatcagccatccatgttgctttttgaacctttataggctcaacaggttcatcacccctattttgtctctgatgtttcatggccttgat |
301 |
Q |
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| T |
29918732 |
tccatcagccatccatgttgctttttgaacctttataggctcaacaggttcatcacccctattttgtctctgatgtttcatggccttgat |
29918821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 47918482 - 47918427
Alignment:
| Q |
230 |
tgctttttgaacctttataggctcaacaggttcatcacccctattttgtctctgat |
285 |
Q |
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| T |
47918482 |
tgcttttcgaacctttataggctcaacaggttcatctcccctattttgtctctgat |
47918427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 47918600 - 47918479
Alignment:
| Q |
50 |
aatcttgatttatattactaattctctaactgaannnnnnnataatttcatagatcacagcagcaatttcaaaagtttagtacttagtacctgaattatg |
149 |
Q |
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| T |
47918600 |
aatcttgatttatattactaatactctgactgcaattttttataatatcatagattgcagcagcaatttcaaaagcttaat---tagtacctgaattatg |
47918504 |
T |
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| Q |
150 |
ccagcatggtcaccccttgagtgct |
174 |
Q |
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| T |
47918503 |
ccggaatggtcaccctttgagtgct |
47918479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 15419100 - 15419144
Alignment:
| Q |
191 |
ccaagtccctggccaatgagatccatcagccatccatgttgcttt |
235 |
Q |
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| T |
15419100 |
ccaagttcctggccaatgagtaccatcagccatccatgtagcttt |
15419144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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