View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7983_low_1 (Length: 652)
Name: NF7983_low_1
Description: NF7983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7983_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Complemental strand, 33298691 - 33298226
Alignment:
| Q |
19 |
tatatgagattcaatgatagactcaaaaaatagtcaaatgaatgtggcatagcaagaaacattgttcatcttaccaacacgagagattgaagcaaggtac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33298691 |
tatatgagattcaatgatagactcaaaaaatagtcaaatgaatgtgacatagcaagaaacattgttcatcttaccaacacgagagattgaagcaaggtac |
33298592 |
T |
|
| Q |
119 |
actgctttgcacatgttttctatgaaaacaactgtataggcataagcatcaaatgataagtctctagctccagcaaccaaagcaccagctatgataatcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33298591 |
actgctttgcacatgttttctatgaaaacaactgtataggcataagcatcaaatgataagtctctagctccagcaaccaaagcaccagctatgataatcc |
33298492 |
T |
|
| Q |
219 |
cgacactattaaatcccttaatccgttaggcaaattaattaaggcgtaataatcactaagaattaattaaaaaatttattagctacgcagaactaaagtg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33298491 |
cgacactattaaatcccttaatccgttaggcaaattaattaaggcgtaataatcactaagaattaattaaaaaatttattagctacgcagaactaaagtg |
33298392 |
T |
|
| Q |
319 |
ctcattttcttaaccaaactaatcggttaattgatatcgttaagcttcattcagatttttggatcgaagagtggtgatttggctagnnnnnnnnngacgt |
418 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33298391 |
ctcattttcttaagcaaactaatcggttaattgatatcgttaagcctcattcagatttttggatcgaagagtggtgatttggctagttttttgttgacgt |
33298292 |
T |
|
| Q |
419 |
gtcataaaacaggtatattataaatccatctgaatggttctacattaggttttatgtcacgtcgac |
484 |
Q |
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| T |
33298291 |
ggcattaaacaggtatattataaatccatctgaatggttctacattaggttttatgccacgtcgac |
33298226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 33317872 - 33317650
Alignment:
| Q |
21 |
tatgagattcaatgatagactcaaaaaatagtcaaatgaatgtggcatagcaagaaa-cattgttcatcttaccaacacgagagattgaagcaaggtaca |
119 |
Q |
| |
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||||||||| || | | |||| ||||||||||| |||||||| | |||| ||| ||| ||||| | ||||||||||||||||| || |||||||| | || |
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| T |
33317872 |
tatgagattaaacggtggactaaaaaaatagtctaatgaatgagacataacaaaaaaacattgatgatcttaccaacacgagaaatagaagcaag-tgca |
33317774 |
T |
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| Q |
120 |
ctgctttgcacatgttttctatgaaaacaactgtataggcataagcatcaaatgataagtctctagctccagcaaccaaagcaccagctatgataatccc |
219 |
Q |
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||| |||||| ||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||| ||| |||||||| ||||||||||||||||| |
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| T |
33317773 |
ctgatttgcagatgttttttatgaaaacaattgtataggcataagcattaagtgataagtctctagctctagcgaccaaagcgccagctatgataatccc |
33317674 |
T |
|
| Q |
220 |
gacactattaaatcccttaatccg |
243 |
Q |
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||||||||||||||||||||||| |
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| T |
33317673 |
aacactattaaatcccttaatccg |
33317650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 529 - 632
Target Start/End: Complemental strand, 33298158 - 33298055
Alignment:
| Q |
529 |
caatgagagtactataccttccaagaacaaaacttgaatgtttcttccctgatagaaaatactccataaccattgtgaaggccacactagttcttctaag |
628 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
33298158 |
caatgagagtaccataccttccaagaacaaaacttgaatgtttctttcctgatagaaaatactccataatcattgtgaatgccacactagttcttctaag |
33298059 |
T |
|
| Q |
629 |
agtg |
632 |
Q |
| |
|
|||| |
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|
| T |
33298058 |
agtg |
33298055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 43 - 243
Target Start/End: Complemental strand, 41192244 - 41192045
Alignment:
| Q |
43 |
aaaaaatagtcaaatgaatgtggcatagcaagaaacattgttcatcttaccaacacgagagattgaagcaaggtacactgctttgcacatgttttctatg |
142 |
Q |
| |
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||||||||||| |||||||| | |||| ||| |||||||| | ||||||||||||||||| || |||||||| | || || |||||| ||||||| |||| |
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| T |
41192244 |
aaaaaatagtctaatgaatgagacataacaaaaaacattgatgatcttaccaacacgagaaatagaagcaag-tgcattgatttgcagatgttttttatg |
41192146 |
T |
|
| Q |
143 |
aaaacaactgtataggcataagcatcaaatgataagtctctagctccagcaaccaaagcaccagctatgataatcccgacactattaaatcccttaatcc |
242 |
Q |
| |
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||||||| |||||| |||||||||| |||||||||||||||||||| ||| |||||||| ||||||||||||||||| | |||||||||||||||||||| |
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| T |
41192145 |
aaaacaattgtatacgcataagcattaaatgataagtctctagctctagcgaccaaagcgccagctatgataatcccaatactattaaatcccttaatcc |
41192046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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