View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7983_low_10 (Length: 344)
Name: NF7983_low_10
Description: NF7983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7983_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 5910825 - 5910507
Alignment:
| Q |
18 |
acataaatggttagtcttgctttgagatttactcataattatctaactgcagcttcctaatccttgctacttaagctaatcatcatttttaactactaac |
117 |
Q |
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| T |
5910825 |
acataaatggttagtcttgctttgagatttactcataattatctaactgcagcttcctaatccttgctacttaagctaatcatcatttttaactactaac |
5910726 |
T |
|
| Q |
118 |
atatcctaataatatatgaaagagtaacacatttatatatatagtttgcagtcccctccatttaggcactattatttcagctaacattgcactttaaaga |
217 |
Q |
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| T |
5910725 |
atatcctaataatatatgaaagagtaacacatttacatatatagtttgcagtcccctccatttaggcactattatttcagctaacattgcactttaaaga |
5910626 |
T |
|
| Q |
218 |
tggatgtttcaaatgttaataagttgctggtgaagagagcaccatccaaaactttggtggtccgattcaatttcttctgttttgccatctttctgattgt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5910625 |
tggatgtttcaaatgttaataagttgctggtgaagagagcaccatccaaaactttggtggtccgattcaatttgttctgttttgccatctttctgattgt |
5910526 |
T |
|
| Q |
318 |
ttatgcaacccttcttctc |
336 |
Q |
| |
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||||||||||||||||||| |
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| T |
5910525 |
ttatgcaacccttcttctc |
5910507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 20 - 335
Target Start/End: Complemental strand, 5915213 - 5914894
Alignment:
| Q |
20 |
ataaatggttagtcttgctttgagatttact-------cataattatctaactgcagcttcctaatccttgctacttaagctaatcatcatttttaacta |
112 |
Q |
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||||||||||||||||||||||||| ||||| ||||||| |||||| | ||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
5915213 |
ataaatggttagtcttgctttgagaattacttataagtcataattctctaacaactacttcctaatccttgctacttaagctaatcctcatatttaacta |
5915114 |
T |
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| Q |
113 |
ctaacatatcctaataatatatgaaagagtaacacatttatatatatagtttgcagtcccctcca-tttaggcactattatttcagc--taacattgcac |
209 |
Q |
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|||||| |||| |||| |||||||||| | |||||| ||||||||| || ||||||||||| |||||||||| ||||||| | ||||||| ||| |
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| T |
5915113 |
ctaacacatcc---taatttatgaaagagggattcatttacatatatagtgtgtagtcccctccattttaggcactgttatttctcctataacatttcac |
5915017 |
T |
|
| Q |
210 |
tttaaagatggatgtttcaaatgttaataagttgctggtgaagagagcaccatccaaaactttggtggtccgattcaatttcttctgttttgccatcttt |
309 |
Q |
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|||||||||||||||||||||| || |||||| ||||||||| ||||||||||||| ||||| | | |||||||||| || ||| || |||||||| |
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| T |
5915016 |
tttaaagatggatgtttcaaatcttcataagt---tggtgaagacagcaccatccaaagctttgattatgagattcaatttgttatgtctttccatcttt |
5914920 |
T |
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| Q |
310 |
ctgattgtttatgcaacccttcttct |
335 |
Q |
| |
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|| ||||||||||||||||||||||| |
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| T |
5914919 |
ctcattgtttatgcaacccttcttct |
5914894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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