View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7983_low_11 (Length: 337)
Name: NF7983_low_11
Description: NF7983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7983_low_11 |
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| [»] scaffold0288 (2 HSPs) |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: scaffold0288 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 50 - 284
Target Start/End: Complemental strand, 14709 - 14475
Alignment:
| Q |
50 |
tacatgaccaaccttgtggtagtgggctcgcggctgcaggtggtcgccgacatcaaatgagacgcagtgacgactgaatggtggtcgcggggatggattt |
149 |
Q |
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| T |
14709 |
tacatgaccaaccttgtggtagtgggttcgcggctgcaggtggtcgccgacatcaaatgagatgcagtgacgactgaatggtggtcacggggatggattt |
14610 |
T |
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| Q |
150 |
tggtttgatattgtttgtatggagatgatgaagattgttgggtgttggtttaatattgtggtgtggtttatagatgaatgaaaatggagggatcatgatt |
249 |
Q |
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| T |
14609 |
tggtttgatattgtttgtatggagatgatgaagattgttgggtgttggtttaatattgtggtgtggtttatagatgaatgaaaatggagggatcatgatt |
14510 |
T |
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| Q |
250 |
catgagtgtaactcaaggccaccagctctctatta |
284 |
Q |
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| T |
14509 |
catgagtgtaactcaaggccaccagctctctatta |
14475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 121 - 281
Target Start/End: Complemental strand, 17907 - 17747
Alignment:
| Q |
121 |
gactgaatggtggtcgcggggatggattttggtttgatattgtttgtatggagatgatgaagattgttgggtgttggtttaatattgtggtgtggtttat |
220 |
Q |
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| T |
17907 |
gactggatggtggttgttgggatgagttttggtttgatattgtttgtatggagatgatgaagattgttgggtgttagtttgatattgtggtgtggtttat |
17808 |
T |
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| Q |
221 |
agatgaatgaaaatggagggatcatgattcatgagtgtaactcaaggccaccagctctcta |
281 |
Q |
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| T |
17807 |
agatgaatgaaaatggagggatattgattcatgtgtgtaactcaaggccactagctctcta |
17747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 127 - 281
Target Start/End: Original strand, 8326 - 8478
Alignment:
| Q |
127 |
atggtggtcgcggggatggattttggtttgatattgtttgtatggagatgatgaagattgttgggtgttggtttaatattgtggtgtggtttatagatga |
226 |
Q |
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| T |
8326 |
atggtggtcgtggggaccggttttggtttgatattgtctgcagggagattatgaagattgttgggtgctgggttgatattgtggtgtggtttatagatga |
8425 |
T |
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| Q |
227 |
a---tgaaaatggagggatcatgattcatgagtgtaactcaaggccaccagctctcta |
281 |
Q |
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| T |
8426 |
atattgaaaatggaggg-----gagtaatgtgtgtaactcaaggccactagctctcta |
8478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 281
Target Start/End: Complemental strand, 4639790 - 4639639
Alignment:
| Q |
127 |
atggtggtcgcggggatggattttggtttgatattgtttgtatggagatgatgaagattgttgggtgttggtttaatattgtggtgtggtttatagatga |
226 |
Q |
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| T |
4639790 |
atggtggtcgtggggaccggttttggtttgatattgtctgcagggagattatgaagattgttgggtgctgggttgatattgtggtgtggtttatagatga |
4639691 |
T |
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| Q |
227 |
a---tgaaaatggagggatcatgattcatgagtgtaactcaaggccaccagctctcta |
281 |
Q |
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| T |
4639690 |
atattgaaaatggaggg-----ga-taatgtgtgtaactcaaggccactagctctcta |
4639639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 3791637 - 3791713
Alignment:
| Q |
162 |
gtttgtatggagatgatgaagattgttgggtgttggtttaatattgtggtgtggtttatagatgaatgaaaatggag |
238 |
Q |
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| T |
3791637 |
gtttgtgtggagatggtgaagattgctaggggatggtttgatattgtggtgtggtttatacatgaatggaaatggag |
3791713 |
T |
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