View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7983_low_13 (Length: 314)
Name: NF7983_low_13
Description: NF7983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7983_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 31 - 307
Target Start/End: Complemental strand, 1057791 - 1057514
Alignment:
| Q |
31 |
acaaggtcaagtgtgtttgtgaagttttccacaaatgtgggtctttaccttcaagttgagtcgtacagctgtaatttccaagaaagacacctagcgaatt |
130 |
Q |
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| T |
1057791 |
acaaggtcaagtgtgtttgtgaagttttcaccaaatgtgggtctttaccttcaagttgagtcgtacagctgtaatttccaagaaagacacctagcgaatt |
1057692 |
T |
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| Q |
131 |
gagttgtttattttattcttgagatagtaaagattttgtcaagtttttcatttttaaccatagttcttgcccatataaaccaacatgctttagtcacnnn |
230 |
Q |
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| T |
1057691 |
gagttgtttattttattcttgagatagtaaagattttgtcaagtttttcatttttaaccatagttcttgcccatataaaccaacatgctttagtcacaaa |
1057592 |
T |
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| Q |
231 |
nnnnnnnnnnnntccaacatgctgtgaac-attaatgacatataaccggccggtaaaagctcatgtttaggggttcat |
307 |
Q |
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| T |
1057591 |
aaataaaaaaaattcaacatgctgtgaacaattaatgacatataaccggccggtaaaagctcatggttagggcttcat |
1057514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34092427 - 34092463
Alignment:
| Q |
1 |
ttctattttttctaccaaaaattctttaatacaaggt |
37 |
Q |
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| T |
34092427 |
ttctattttttctaccaaaaattatttaatacaaggt |
34092463 |
T |
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