View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7983_low_14 (Length: 310)
Name: NF7983_low_14
Description: NF7983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7983_low_14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 39244871 - 39245173
Alignment:
| Q |
14 |
aatatgtaaagaaagaaatgtcatgtgaaagggatgaaatctcagattaaggttttaattttttgaaaatccttattgtctcccatctcaaattcatcat |
113 |
Q |
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| T |
39244871 |
aatatgtaaagaaagaaatgtcatgtgaaagggatgaaatctcagattaaggttttaattttttgaaaatccttattgtctcccatctcaaattcatcat |
39244970 |
T |
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| Q |
114 |
gtcaactctttagtgtttttcttcattttagttgttggtggatgtaaaattaaacacatgacgaacaatgaaagaaattcaattgcct------nnnnnn |
207 |
Q |
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| T |
39244971 |
gtcaactctttagtgtttttcttcattttagttgttgctggatgtaaaattaaacgcatgacgaacaacgaaagaaattcaattgcctaaaaaaaaaaaa |
39245070 |
T |
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| Q |
208 |
nnnnncgaaagaaactctaatattggtttctagctccaccatggtcatagtgtagaatattggtgaagaagacgacgacaatatagaaaaatatgtaaga |
307 |
Q |
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| T |
39245071 |
aaaaacgaaagaaactctaatattggtttctagctccaccatggtcatagtgtagaatattggtgaagaagacgacgacaatatagaaaaatatgtaaga |
39245170 |
T |
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| Q |
308 |
aca |
310 |
Q |
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||| |
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| T |
39245171 |
aca |
39245173 |
T |
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