View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7983_low_15 (Length: 269)
Name: NF7983_low_15
Description: NF7983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7983_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 39245160 - 39245410
Alignment:
| Q |
1 |
aatatgtaagaacattgatgttcgtgaattattttttgggatgatttgagattttgtatatggtttataattttgcaattttaataaaaagtcacgttag |
100 |
Q |
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| T |
39245160 |
aatatgtaagaacattgatgttcgtgaattattttttgggatgatttgagattttgtatatggtttataattttgcaattttaataaaaagtcacgttag |
39245259 |
T |
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| Q |
101 |
tacgtgagttaattaggagccatgtcaatttttnnnnnnnnnnnncttatgatttttcacgtcaactaattcaatc-----atataatcactcaactaaa |
195 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39245260 |
tacgtgagttaattaggagccatgtcaattttaaaaaataaaaaacttatgatttttcacgtcaactaattcaatcatataatataatcactcaactaaa |
39245359 |
T |
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| Q |
196 |
cacacaaattagaagactctagcttagacaacattggttttctagcttactg |
247 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
39245360 |
cacacaaattaaaagactctagc-tagacaacattggttttctagcttactg |
39245410 |
T |
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