View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7983_low_17 (Length: 214)
Name: NF7983_low_17
Description: NF7983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7983_low_17 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold1089 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 7814983 - 7814905
Alignment:
| Q |
36 |
gggcatttccatttcttggatgagcttgtatacttcgactgtcaaggagataaaaaacaacatttatacaaaatttatg |
114 |
Q |
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| T |
7814983 |
gggcatttccattccttggataaggttgtattcttcgactgtcaaggagataaaaaacaacatttatacaaaatatatg |
7814905 |
T |
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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 14435695 - 14435751
Alignment:
| Q |
5 |
gtgagatgaaacacattcaataaccgaggatgggcatttccatttcttggatgagct |
61 |
Q |
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| T |
14435695 |
gtgagacgaaacacattcaataaccgaatttggccatttccattccttggatgagct |
14435751 |
T |
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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 31013617 - 31013679
Alignment:
| Q |
152 |
ggattacctcagtggaaggtaaaagaggaggattattataaccaaagagaaacttgaagaaac |
214 |
Q |
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| T |
31013617 |
ggattacctcagtggaaggtaaaagaggaggattattatcaccaaagagaaacttgaagaaac |
31013679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 31707762 - 31707700
Alignment:
| Q |
152 |
ggattacctcagtggaaggtaaaagaggaggattattataaccaaagagaaacttgaagaaac |
214 |
Q |
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| T |
31707762 |
ggattaccccagtggaaggtaaaagaggaggattagtatcaccgaagagaaacttgaagaaac |
31707700 |
T |
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Target: scaffold1089 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 721 - 777
Alignment:
| Q |
5 |
gtgagatgaaacacattcaataaccgaggatgggcatttccatttcttggatgagct |
61 |
Q |
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| T |
721 |
gtgagacgaaacacattcaagaaccgaatttggccatttccattccttggatgagct |
777 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 19316700 - 19316756
Alignment:
| Q |
5 |
gtgagatgaaacacattcaataaccgaggatgggcatttccatttcttggatgagct |
61 |
Q |
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| T |
19316700 |
gtgagatgaaacacattcaagaactgaaattgggcatttccattccttagatgagct |
19316756 |
T |
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