View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7983_low_18 (Length: 210)
Name: NF7983_low_18
Description: NF7983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7983_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 41806650 - 41806473
Alignment:
| Q |
19 |
tgtgaatcatttttatgcatgtattgaatataaagaggattattgtcatatgtaggatacttatgtgacatcaatattcactagttgtttaggatcagaa |
118 |
Q |
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| T |
41806650 |
tgtgaatcatttttatgcatgtattgaatataaagaggattattgtcatatgtaggatacttatgtgacatcaatattcactagttgtttaggatcagaa |
41806551 |
T |
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| Q |
119 |
attaatatagactacatctagtacttttatttcatgctcaacgatgttagttagatcctaaatgcaagaatcacaggt |
196 |
Q |
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| T |
41806550 |
attaatatagactacatctagtacttttatttcatgctcaacgatgggagttagatcctaaatgcaagaatcacaggt |
41806473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 42033969 - 42034077
Alignment:
| Q |
88 |
atcaatattcactagttgtttaggatcagaaattaatatagactacatctagtacttttatttcatgctcaacgatgttagttagatcctaaatg-caag |
186 |
Q |
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|||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||| |||| |||| |||| |||||| |||| |
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| T |
42033969 |
atcaatattcactagttgtttaggatcataaattattacagactacatctagtacttttatttcatgctcaatgatgggagttggatcataaatgccaag |
42034068 |
T |
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| Q |
187 |
aatcacagg |
195 |
Q |
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| T |
42034069 |
aatcacagg |
42034077 |
T |
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