View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7983_low_4 (Length: 419)
Name: NF7983_low_4
Description: NF7983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7983_low_4 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Complemental strand, 338810 - 338419
Alignment:
| Q |
14 |
ggacatcacttgcctgacatttaaccaaagtaaaaaatatttagtatcaacccaaacaacaatttttaatatattattgtatcccaatatgctttcctta |
113 |
Q |
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| T |
338810 |
ggacatcacttgcctgacatttaaccaaagtaaaaaatatttagtatcaacccacacaacaatttttaatatattattgtatcccaatatgctttcctta |
338711 |
T |
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| Q |
114 |
aatgttgtaccctcataagaatacaatgcaaaattggtattaagtaccaaagtttatcaaattcagctgcatagttaatgcagcaaaaatatactatatt |
213 |
Q |
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| T |
338710 |
aatgttgtaccctcataagaatacaatgcaaaaatggtattaagtaccaaagtttatcaaattcagctgcatagttaatgcagcaaaaaaatactatatt |
338611 |
T |
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| Q |
214 |
ttcatgcaaaacgtaacaccagcaaaataaaaagatgaagagaaaagataggtagtgataattgtactagtcctcaagaatttagttaatttcaaaagac |
313 |
Q |
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| T |
338610 |
ttcatgcaaaacgtaacaccagcaaaataaaaagatgaagagaaaagataggtagtgataattgtactagtcctcaagaatttacttaatttcaaaagac |
338511 |
T |
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| Q |
314 |
caggtgtgttaggcatctaaatgtatgttacacaaactgtttcggttacaatgtttccgtggataatttgtaagagtaatagcagttgatgt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
338510 |
caggtgtgttaggcatctaaatgtatgttacacaaactgtttcggttacaatgtttccgtggataatttgtaagagtaatagcagttgatgt |
338419 |
T |
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