View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7983_low_5 (Length: 413)
Name: NF7983_low_5
Description: NF7983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7983_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 20410814 - 20411193
Alignment:
| Q |
18 |
atacactggtattgacaaaccgtaatcaaacacaagtagttctctataacttgatagataacaaagtagagaaaactagaatt-aatgatatcactcggt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
20410814 |
atacactggtattgacaaaccgtaatcaaacacaagtagttctctataacttgatagataacaaagtagagaaaactagaatttaatgatatctctcggt |
20410913 |
T |
|
| Q |
117 |
tcgtccatgtcaaggattatgttgaaagcttggtttcatatccttaaaagtaagtttatctttgacaattttacttgtttgattttgtgttaattcttgc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
20410914 |
tcgtccatgtcaaggattatgttgaaagcttggtttcatatccttaaaagtaagtttgtctttgacaattt-acttgtttgattttgtgttaattcttgc |
20411012 |
T |
|
| Q |
217 |
gtgttgtataatatgttgtgtgagtattgtcttatgatgactttgaattaattgtattgttgagttattttctgtttgctatttttaagagttttactat |
316 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
20411013 |
gtgttgtataatatattgtgtgagtattgtcttatgatgactttgaattaattgtattgttcagttattttctgtttgctattttgaagagttttactat |
20411112 |
T |
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| Q |
317 |
tgcttaatgaaatgaatttgtgtgctcttatattta----aagctagaaaattgtattttctaatggtgatttttccaacac |
394 |
Q |
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| T |
20411113 |
tgcttaatgaaatgaatttgtgtgctcttgtatttaatttaagctagaaaa-tgtattttttgatggtgattcttccaacac |
20411193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 58 - 394
Target Start/End: Original strand, 20405574 - 20405913
Alignment:
| Q |
58 |
tctctataacttgatagataacaaagtagagaaaactagaatt-aatgatatcactcggttcgtccatgtcaaggattatgttgaaagcttggtttcata |
156 |
Q |
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| T |
20405574 |
tctctataacttgatagataacaaagtagagaaaactagaatttaatgatatctctcggttcgtccatgtcaaggattatgttgaaagcttggtttcata |
20405673 |
T |
|
| Q |
157 |
tccttaaaagtaagtttatctttgacaattttacttgtttgattttgtgttaattcttgcgtgttgtataatatgttgtgtgagtattgtcttatgatga |
256 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20405674 |
tccttaaaagtaagtttgtctttgacaattt-acttgtttgattttgtgttaattcttgcgtgttgtataatatattgtgtgagtattgtcttatgatga |
20405772 |
T |
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| Q |
257 |
ctttgaattaattgtattgttgagttattttctgtttgctatttttaagagttttactattgcttaatgaaatgaatttgtgtgctcttatattta---- |
352 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20405773 |
ctttgaattaattgtattgttcagttattttctgtttgctattttgaagagttttactattgcttaatgaaatgaatttgtgtgctcttgtatttaattt |
20405872 |
T |
|
| Q |
353 |
aagctagaaaattgtattttctaatggtgatttttccaacac |
394 |
Q |
| |
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||||||||||| |||||||| | ||||||||| ||||||||| |
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| T |
20405873 |
aagctagaaaa-tgtattttttgatggtgattcttccaacac |
20405913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 20452954 - 20453108
Alignment:
| Q |
18 |
atacactggtattgacaaaccgtaatcaaacacaagtagttctctataacttgatagataacaaagtagagaaaactagaattaatgatatcactcggtt |
117 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||| |
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| T |
20452954 |
atacattggtattgacaaaccgtaaacaaacacaagtagttctctataacttgatagataacaaagtagagagaactagaattaatgatatttcttggtt |
20453053 |
T |
|
| Q |
118 |
cgtccatgtcaaggattatgttgaaagcttggtttcatatccttaaaagtaagtt |
172 |
Q |
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| T |
20453054 |
catccatgtcaaggattatgttgaaagcttggtttgataaccttaaaagtaagtt |
20453108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 286 - 394
Target Start/End: Original strand, 20453107 - 20453218
Alignment:
| Q |
286 |
ttctgtttgctatttttaagagttttactattgcttaatgaaatgaatttgtgtgctcttatattta----aagctagaaaattgtattttctaatggtg |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |
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| T |
20453107 |
ttctgtttgctatttttaagagttttactattgcttaatgaaatgaatttgtgtgctcttatatttaatttaagctagaaaa-tgtattttctgatggtg |
20453205 |
T |
|
| Q |
382 |
atttttccaacac |
394 |
Q |
| |
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||| ||||||||| |
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| T |
20453206 |
attcttccaacac |
20453218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 278
Target Start/End: Complemental strand, 11970792 - 11970649
Alignment:
| Q |
134 |
tatgttgaaagcttggtttcatatccttaaaagtaagtttatctttgacaattttacttgtttgattttgtgttaattcttgcgtgttgtataatatgtt |
233 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||||||| ||| ||||| ||||||||||||| |||||| |||| | || || | |||||||| || |
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| T |
11970792 |
tatgttgaaagcttggttttgtattgttgaaagtaagtttctctacgacaa-tttacttgtttgaatttgtgataatacatgtatgctatataatatatt |
11970694 |
T |
|
| Q |
234 |
gtgtgagtattgtcttatgatgactttgaattaattgtattgttg |
278 |
Q |
| |
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|| ||| ||| |||||||||| ||||| || |||||||||||| |
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| T |
11970693 |
gtatgatcattttcttatgatggttttgatttgattgtattgttg |
11970649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 5436638 - 5436561
Alignment:
| Q |
130 |
ggattatgttgaaagcttggtttcatatccttaaaagtaagtttatctttgacaattttacttgtttgattttgtgtta |
208 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||| |||| |||| |||||||||||| ||||||||| |
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| T |
5436638 |
ggattatgttgaaagcttggtttggtatcgttaaaagtaagttcctcttcaacaa-gttacttgtttgaatttgtgtta |
5436561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 554732 - 554792
Alignment:
| Q |
127 |
caaggattatgttgaaagcttggtttcatatccttaaaagtaagtttatctttgacaattt |
187 |
Q |
| |
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||||||||||||||||||||| |||| ||| || |||||||||| ||||||||||||| |
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|
| T |
554732 |
caaggattatgttgaaagcttagtttggtatagttgaaagtaagttcctctttgacaattt |
554792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 27618720 - 27618765
Alignment:
| Q |
127 |
caaggattatgttgaaagcttggtttcatatccttaaaagtaagtt |
172 |
Q |
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| T |
27618720 |
caaggattatgttgaaagcttggtttcaatttcttgaaagtaagtt |
27618765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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