View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7983_low_6 (Length: 398)

Name: NF7983_low_6
Description: NF7983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7983_low_6
NF7983_low_6
[»] chr3 (14 HSPs)
chr3 (18-366)||(5004457-5004809)
chr3 (18-366)||(46404338-46404651)
chr3 (198-371)||(11937561-11937735)
chr3 (206-366)||(16975629-16975789)
chr3 (75-229)||(16975453-16975616)
chr3 (238-370)||(9104522-9104654)
chr3 (235-357)||(8731144-8731266)
chr3 (235-357)||(9083031-9083153)
chr3 (131-225)||(11937744-11937838)
chr3 (287-366)||(7336431-7336509)
chr3 (220-283)||(17542446-17542508)
chr3 (240-302)||(17542500-17542562)
chr3 (314-371)||(17542388-17542444)
chr3 (314-366)||(43277783-43277834)
[»] chr6 (12 HSPs)
chr6 (30-366)||(10751297-10751637)
chr6 (198-371)||(32449949-32450122)
chr6 (18-366)||(34636348-34636656)
chr6 (18-222)||(32450134-32450352)
chr6 (18-189)||(23260483-23260667)
chr6 (221-351)||(26182392-26182522)
chr6 (228-366)||(23260351-23260489)
chr6 (18-136)||(25005305-25005429)
chr6 (250-330)||(20555629-20555709)
chr6 (240-353)||(24163272-24163387)
chr6 (250-365)||(13773121-13773235)
chr6 (214-263)||(13773185-13773234)
[»] chr1 (19 HSPs)
chr1 (18-366)||(37666915-37667267)
chr1 (198-371)||(35761736-35761909)
chr1 (198-370)||(19198447-19198622)
chr1 (18-225)||(35761918-35762139)
chr1 (251-366)||(16075097-16075211)
chr1 (287-366)||(9537128-9537206)
chr1 (287-366)||(43407104-43407182)
chr1 (240-302)||(6836246-6836308)
chr1 (313-371)||(18472620-18472677)
chr1 (292-354)||(26317615-26317677)
chr1 (257-368)||(28561778-28561890)
chr1 (213-366)||(338431-338577)
chr1 (18-61)||(9537402-9537445)
chr1 (287-365)||(8421953-8422030)
chr1 (314-370)||(6836394-6836449)
chr1 (282-362)||(25921874-25921953)
chr1 (213-267)||(16075096-16075150)
chr1 (304-366)||(33007388-33007449)
chr1 (127-207)||(16074987-16075067)
[»] scaffold0413 (1 HSPs)
scaffold0413 (18-307)||(9001-9279)
[»] chr5 (14 HSPs)
chr5 (18-366)||(536975-537289)
chr5 (92-371)||(4557689-4557979)
chr5 (214-283)||(6309116-6309184)
chr5 (213-352)||(30910117-30910253)
chr5 (213-353)||(38001301-38001437)
chr5 (311-371)||(25101612-25101671)
chr5 (311-371)||(25160705-25160764)
chr5 (250-351)||(42861769-42861869)
chr5 (314-370)||(6309186-6309241)
chr5 (314-357)||(104702-104745)
chr5 (287-357)||(40691266-40691335)
chr5 (240-290)||(6308999-6309049)
chr5 (214-267)||(42861770-42861823)
chr5 (217-265)||(6309083-6309130)
[»] chr7 (18 HSPs)
chr7 (18-366)||(15873712-15874026)
chr7 (198-371)||(22077977-22078150)
chr7 (198-371)||(21491179-21491353)
chr7 (212-371)||(18367013-18367173)
chr7 (238-366)||(11036083-11036210)
chr7 (92-229)||(21491358-21491503)
chr7 (92-229)||(18367192-18367337)
chr7 (250-371)||(48653529-48653649)
chr7 (238-307)||(9993633-9993702)
chr7 (213-362)||(12911434-12911581)
chr7 (287-366)||(10288528-10288606)
chr7 (287-366)||(40106201-40106279)
chr7 (251-366)||(12196433-12196547)
chr7 (213-264)||(12196497-12196548)
chr7 (289-370)||(9993756-9993836)
chr7 (214-267)||(48653595-48653648)
chr7 (18-57)||(22077792-22077831)
chr7 (294-363)||(49170042-49170111)
[»] chr4 (13 HSPs)
chr4 (198-371)||(49499403-49499577)
chr4 (92-229)||(49499253-49499398)
chr4 (237-366)||(40459293-40459420)
chr4 (251-371)||(2761792-2761911)
chr4 (240-302)||(69628-69690)
chr4 (314-370)||(69782-69837)
chr4 (287-366)||(28968976-28969059)
chr4 (304-366)||(55162562-55162623)
chr4 (214-283)||(69712-69780)
chr4 (290-364)||(13652928-13653002)
chr4 (290-364)||(13661053-13661127)
chr4 (18-62)||(28969228-28969272)
chr4 (314-371)||(42899903-42899960)
[»] chr8 (8 HSPs)
chr8 (258-371)||(40841209-40841322)
chr8 (214-371)||(44436442-44436596)
chr8 (311-371)||(22635715-22635774)
chr8 (304-366)||(41958159-41958220)
chr8 (238-299)||(35840649-35840710)
chr8 (311-370)||(3189123-3189181)
chr8 (314-371)||(22816008-22816064)
chr8 (287-331)||(35840736-35840780)
[»] chr2 (16 HSPs)
chr2 (213-366)||(18292431-18292582)
chr2 (250-351)||(28266864-28266964)
chr2 (250-371)||(12774122-12774244)
chr2 (246-332)||(29270993-29271079)
chr2 (287-362)||(40729168-40729242)
chr2 (287-366)||(41339990-41340068)
chr2 (213-366)||(40447804-40447950)
chr2 (250-362)||(35670493-35670604)
chr2 (314-370)||(44789002-44789057)
chr2 (214-267)||(12774190-12774243)
chr2 (214-283)||(44788932-44789000)
chr2 (258-302)||(44788866-44788910)
chr2 (213-267)||(36731989-36732043)
chr2 (287-363)||(34397559-34397632)
chr2 (214-267)||(35670550-35670603)
chr2 (293-370)||(36731886-36731962)
[»] scaffold0013 (2 HSPs)
scaffold0013 (314-371)||(242727-242783)
scaffold0013 (246-299)||(242883-242936)
[»] scaffold1838 (1 HSPs)
scaffold1838 (18-62)||(335-379)
[»] scaffold0041 (1 HSPs)
scaffold0041 (287-367)||(33027-33100)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 5004809 - 5004457
Alignment:
Q  18 atatgatgtttgtatgataatgttatgtggaatgacatttatttt-----tctattcatacatgtttctgtggtattgtaaagaagtgttagactttgct 112  Q
    ||||||||| |||||||||||||||||||||||||||||||||||     |||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  5004809 atatgatgtctgtatgataatgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgct 5004710  T
Q  113 gataaactaaataaatgaaaatatgagttttatgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagt 212  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5004709 gataaactaaataaatgaaaatacgagttttacgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatcttactgtatttgtctatgagt 5004610  T
Q  213 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatctt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| |||     
T  5004609 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctg 5004510  T
Q  313 cattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    |||||||||||||||||| | |||||||||||||||||||||||| ||||||||    
T  5004509 cattttcatgatcatgca-tggcatatgcatctgtgtggtgccttagtggcggg 5004457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 46404651 - 46404338
Alignment:
Q  18 atatgatgtttgtatgataatgttatgtggaatgacatttatttttctattcatacatgtttctgtggtattgtaaagaagtgttagactttgctgataa 117  Q
    ||||||| | |||||||||||||| ||||||||| |||||    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  46404651 atatgatatctgtatgataatgttttgtggaatggcattt----ttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataa 46404556  T
Q  118 actaaataaatgaaaatatgagttttatgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgcc 217  Q
    |||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404555 actaaataaatgaaaatat-----------------ttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgcc 46404473  T
Q  218 ttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattt 317  Q
    || |||||||||||||||||||||||||||||             ||||||||||||||||||||| |||||||| ||||||||| |||| | | |||||    
T  46404472 ttcgtggcgggttaataatatatttctttgtg-------------gggataacatcatattgcattattgtgccttagtggcgggttttagtgtgcattt 46404386  T
Q  318 tcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    ||||| |  |||| | |||||||||||||||||||||||| ||||||||    
T  46404385 tcatgtttgtgca-tggcatatgcatctgtgtggtgccttagtggcggg 46404338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 198 - 371
Target Start/End: Complemental strand, 11937735 - 11937561
Alignment:
Q  198 tatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 297  Q
    |||||| |||||  |||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11937735 tatttgactatgcatttgccttagtggcaggttcataatatatttctgtgtggtgccttagtggcgggataatatcatattgcattgttgtgcctaagtg 11937636  T
Q  298 gcgggatttaatcttcatt-ttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttatt 371  Q
    |  ||||||| | |||||| || |||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  11937635 gttggatttagttttcattgtttatgatcatgcattagcatatgcatttgtgtggtgcctgtgtggcgggttatt 11937561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 206 - 366
Target Start/End: Original strand, 16975629 - 16975789
Alignment:
Q  206 tatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggc-gggat 304  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |    
T  16975629 tatgcgtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggtt 16975728  T
Q  305 ttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    ||| ||| ||||||||||||||| || | |||||||||||||||||||||| | ||||||||    
T  16975729 ttagtctgcattttcatgatcatcca-tggcatatgcatctgtgtggtgccatagtggcggg 16975789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 75 - 229
Target Start/End: Original strand, 16975453 - 16975616
Alignment:
Q  75 tgtttctgtggtattgt-aaagaagtgttagactttgctgataaactaaataaatgaaaat--------atgagttttatgaaaatatttcagtttggtc 165  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||     
T  16975453 tgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatatagaaatatgagttttatgaaaatatttcagtttggtt 16975552  T
Q  166 catgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgccttagtggcgggt 229  Q
    ||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||    
T  16975553 catgtggatgatgatgtgttaatatgtgactatatttgcctatgagtttgccttagtggcgggt 16975616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 238 - 370
Target Start/End: Original strand, 9104522 - 9104654
Alignment:
Q  238 tatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcat 337  Q
    ||||||| ||||||||||| ||||| ||  || |||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  9104522 tatttctgtgtggtgcctttgtggcaggtaaatatcatattgctttgttgtgcctaagtggcgtgatttagtcttcattttcatgatcatgcattagcat 9104621  T
Q  338 atgcatctgtgtggtgcctttgtggcgggttat 370  Q
    ||||||||||||||||||| ||||| |||||||    
T  9104622 atgcatctgtgtggtgcctgtgtggtgggttat 9104654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 235 - 357
Target Start/End: Original strand, 8731144 - 8731266
Alignment:
Q  235 atatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcattag 334  Q
    ||||| || ||||||||||||||| |||||| ||  |||||||||| ||||  ||  ||||||| || ||||| ||||||||||||||||||||||||||    
T  8731144 atataattatttgtggtgccttaggggcgggttagtatcatattgctttgtgatgtgtaagtggtggaatttagtcttcattttcatgatcatgcattag 8731243  T
Q  335 catatgcatctgtgtggtgcctt 357  Q
    ||||  ||||| |||||||||||    
T  8731244 cataaacatctatgtggtgcctt 8731266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 235 - 357
Target Start/End: Original strand, 9083031 - 9083153
Alignment:
Q  235 atatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcattag 334  Q
    ||||| || ||||||||||||||| |||||| ||  |||||||||| ||||  ||  ||||||| || ||||| ||||||||||||||||||||||||||    
T  9083031 atataattatttgtggtgccttaggggcgggttagtatcatattgctttgtgatgtgtaagtggtggaatttagtcttcattttcatgatcatgcattag 9083130  T
Q  335 catatgcatctgtgtggtgcctt 357  Q
    ||||  ||||| |||||||||||    
T  9083131 cataaacatctatgtggtgcctt 9083153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 131 - 225
Target Start/End: Complemental strand, 11937838 - 11937744
Alignment:
Q  131 aaatatgagttttatgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgccttagtggc 225  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||  ||| ||| ||||  |||||| |||||||||||||    
T  11937838 aaatatgagttttatgaaaatattttattttggttcatgtggatgatgatgtgttaatacatgattgtgtttgcttatgaggttgccttagtggc 11937744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 366
Target Start/End: Complemental strand, 7336509 - 7336431
Alignment:
Q  287 gtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    |||||| ||||||||| |||| | | |||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  7336509 gtgccttagtggcgggttttagtttgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 7336431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 283
Target Start/End: Complemental strand, 17542508 - 17542446
Alignment:
Q  220 agtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcatt 283  Q
    |||||||||||| || |||||| || |||||||||||||||||||| ||| |||||||||||||    
T  17542508 agtggcgggttactattatatt-ctgtgtggtgccttagtggcgggttaatatcatattgcatt 17542446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 302
Target Start/End: Complemental strand, 17542562 - 17542500
Alignment:
Q  240 tttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcggg 302  Q
    ||||| ||||||||||| ||||| ||  || ||||||||||||||||||| ||||||||||||    
T  17542562 tttctgtgtggtgcctttgtggcaggtaaatatcatattgcattgttgtgtctaagtggcggg 17542500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 17542444 - 17542388
Alignment:
Q  314 attttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttatt 371  Q
    |||||| |||||||||||  ||||||| ||||||||||||||| ||||||||||||||    
T  17542444 attttcgtgatcatgcatc-gcatatgtatctgtgtggtgcctgtgtggcgggttatt 17542388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 43277834 - 43277783
Alignment:
Q  314 attttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    |||||||||||||| ||| | ||||||||||||||||||||||| ||||||||    
T  43277834 attttcatgatcatacatga-catatgcatctgtgtggtgccttagtggcggg 43277783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 30 - 366
Target Start/End: Complemental strand, 10751637 - 10751297
Alignment:
Q  30 tatgataatgttatgtggaatgacatttatttt-----tctattcatacatgtttctgtggtattgtaaagaagtgttagactttgctgataaactaaat 124  Q
    |||||||||||||||||||||||||||||||||     |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10751637 tatgataatgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaat 10751538  T
Q  125 aaatgaaaatatgagttttatgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgccttagtgg 224  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10751537 aaatgaaaatacgagttttacgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgccttagtgg 10751438  T
Q  225 cgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgat 324  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| ||| ||||||||||||    
T  10751437 ctggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctgcattttcatgat 10751338  T
Q  325 catgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    |||||| | |||||||||||||||||||||||| ||||||||    
T  10751337 catgca-tggcatatgcatctgtgtggtgccttagtggcggg 10751297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 198 - 371
Target Start/End: Complemental strand, 32450122 - 32449949
Alignment:
Q  198 tatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 297  Q
    |||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32450122 tatttgactatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 32450023  T
Q  298 gcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttatt 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32450022 gcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcgggttatt 32449949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 34636348 - 34636656
Alignment:
Q  18 atatgatgtttgtatgataatgttatgtggaatgacatttatttttctattcatacatgtttctgtggtattgtaaagaagtgttagactttgctgataa 117  Q
    ||||||||| |||||||||||||||||||| |||||||||   |||||||||||| |||||| |||||||||      ||||||||||||||||||||||    
T  34636348 atatgatgtctgtatgataatgttatgtggcatgacattt---tttctattcatatatgtttttgtggtatt------aagtgttagactttgctgataa 34636438  T
Q  118 actaaataaatgaaaatatgagttttatgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgcc 217  Q
    |||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636439 actaaataaatga-----------------aaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgcc 34636521  T
Q  218 ttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattt 317  Q
    ||||||||||||||||||||||||||||||||             ||||||||||||||||||||| |||||||| ||||||||| |||| | | |||||    
T  34636522 ttagtggcgggttaataatatatttctttgtg-------------gggataacatcatattgcattattgtgccttagtggcgggttttagtgtgcattt 34636608  T
Q  318 tcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    ||||| || |||| | |||||||||||||||||||||||| ||||||||    
T  34636609 tcatgttcgtgca-tggcatatgcatctgtgtggtgccttagtggcggg 34636656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 32450352 - 32450134
Alignment:
Q  18 atatgatgtttgtatgataatgttatgtggaatgacatttatttt-----tctattcatacatgtttctgtggtattgt-aaagaagtgttagactttgc 111  Q
    ||||||||| |||||||||||||||||||||||||||||||||||     ||||| |||| |||||| ||||||||||| |||||||||||||||||||     
T  32450352 atatgatgtgtgtatgataatgttatgtggaatgacatttattttatttttctatgcatatatgtttttgtggtattgttaaagaagtgttagactttgt 32450253  T
Q  112 tgataaactaaataaatgaaa--------atatgagttttatgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttg 203  Q
    |||||||||||||||||||||        ||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||    
T  32450252 tgataaactaaataaatgaaaatatagaaatatgagttttatgaaaatatttcattttggttcatgtgcatgatgatgtgttaatatctgactgtatttg 32450153  T
Q  204 tctatgagtttgccttagt 222  Q
     ||||||||||| ||||||    
T  32450152 cctatgagtttgtcttagt 32450134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 23260667 - 23260483
Alignment:
Q  18 atatgatgtttgtatgataatgttatgtggaatgacattta-----tttttctattcatacatgtttctgtggtattg-taaagaagtgttagactttgc 111  Q
    |||||||||||||||||||||||||||||||||||||||||     |||||||||||||| |||||| |||||||||| ||||||||||||||| |||||    
T  23260667 atatgatgtttgtatgataatgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttaga-tttgc 23260569  T
Q  112 tgataaactaaataaatga--------aaatatgagttttatgaaaatatttcagtttggtccatgtggatgatgatgtgttaata 189  Q
    |||||||||||||||||||        |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23260568 tgataaactaaataaatgaaaatatagaaatatgagttttatgaaaatatttcagtttggttcatgtggatgatgatgtgttaata 23260483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 221 - 351
Target Start/End: Complemental strand, 26182522 - 26182392
Alignment:
Q  221 gtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttca 320  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||   ||||| ||||||| ||||||||||||    
T  26182522 gtggcgggttaataatatatttcttggtcgtgccttagtggcgggataatatcatattgcattgttgtgccactgtggcaggatttagtcttcattttca 26182423  T
Q  321 tgatcatgcattagcatatgcatctgtgtgg 351  Q
    |||||||||||||   |||||||||||||||    
T  26182422 tgatcatgcattaatgtatgcatctgtgtgg 26182392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 228 - 366
Target Start/End: Complemental strand, 23260489 - 23260351
Alignment:
Q  228 gttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggc-gggatttaatcttcattttcatgatca 326  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| | ||| |||| ||| ||||||||||||||    
T  23260489 gttaataatatatttttttgtggtgccttagtggcaggataacatcatgttgcattattgtgcctaagtgacggggttttagtctgcattttcatgatca 23260390  T
Q  327 tgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    |||| | |||||||||||||||||||||||| ||||||||    
T  23260389 tgca-tggcatatgcatctgtgtggtgccttagtggcggg 23260351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 25005305 - 25005429
Alignment:
Q  18 atatgatgtttgtatgataatgttatgtggaatgacatttatttt-----tctattcatacatgtttctgtggtattgt-aaagaagtgttagactttgc 111  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||     |||||||||| |||||| ||||||||||| ||||||||||||||||||||    
T  25005305 atatgatgtctgtatgataattttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttagactttgc 25005404  T
Q  112 tgataaactaaataaatgaaaatat 136  Q
    |||||||||||||||||||||||||    
T  25005405 tgataaactaaataaatgaaaatat 25005429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 330
Target Start/End: Original strand, 20555629 - 20555709
Alignment:
Q  250 gtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgca 330  Q
    |||| ||||||||||||||| ||||||||||||||||||| ||| |||| |||||||| | |||||| |||| ||||||||    
T  20555629 gtgctttagtggcgggataatatcatattgcattgttgtgtctatgtggtgggatttagttttcattatcattatcatgca 20555709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 24163272 - 24163387
Alignment:
Q  240 tttctttgtggt-gccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcatttt-catgatcatgcattagcat 337  Q
    |||||||||||| | |||||||  ||| ||| ||||||||   |||| |||  |||||||||||||||| |||||||||| |||||| ||||||||||||    
T  24163272 tttctttgtggttgtcttagtgatgggttaatatcatattattttgtggtgtttaagtggcgggatttagtcttcatttttcatgattatgcattagcat 24163371  T
Q  338 atgcatctgtgtggtg 353  Q
    ||| ||||||||||||    
T  24163372 atgtatctgtgtggtg 24163387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 365
Target Start/End: Complemental strand, 13773235 - 13773121
Alignment:
Q  250 gtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgt 349  Q
    |||||||||||||||| |||  | ||| | | |||| |||||||||||||| |||  |   | ||||||||||||||||||| ||||||| |||||||||    
T  13773235 gtgccttagtggcgggttaaacttataattctttgtggtgcctaagtggcgagatccatgatccattttcatgatcatgcat-agcatatacatctgtgt 13773137  T
Q  350 ggtgcctttgtggcgg 365  Q
    ||||||| ||||||||    
T  13773136 ggtgcctgtgtggcgg 13773121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 13773234 - 13773185
Alignment:
Q  214 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcg 263  Q
    |||||||||||||||||||   |||| ||||||||||||||| |||||||    
T  13773234 tgccttagtggcgggttaaacttataattctttgtggtgcctaagtggcg 13773185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 37667267 - 37666915
Alignment:
Q  18 atatgatgtttgtatgataatgttatgtggaatgac-----atttatttttctattcatacatgtttctgtggtattgtaaagaagtgttagactttgct 112  Q
    ||||||||| ||||||||||||||||||||||||||      |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  37667267 atatgatgtctgtatgataatgttatgtggaatgacttttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgct 37667168  T
Q  113 gataaactaaataaatgaaaatatgagttttatgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37667167 gataaactaaataaatgaaaatatgagttttatgaaaatatttcagtttggtccatgtggatgatgatgtgttaaaatctgactgtatttgtctatgagt 37667068  T
Q  213 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatctt 312  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||  |||| |||     
T  37667067 ttgccttagtgacgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcggattttagtctg 37666968  T
Q  313 cattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    |||||||||||||||||| |  ||||||||||||||||||||||| ||||||||    
T  37666967 cattttcatgatcatgca-tgtcatatgcatctgtgtggtgccttagtggcggg 37666915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 198 - 371
Target Start/End: Complemental strand, 35761909 - 35761736
Alignment:
Q  198 tatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 297  Q
    |||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  35761909 tatttgactatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcaggataacatcatactgcattgttgtgcctaagtg 35761810  T
Q  298 gcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttatt 371  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35761809 gcggaatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcgggttatt 35761736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 198 - 370
Target Start/End: Complemental strand, 19198622 - 19198447
Alignment:
Q  198 tatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcat---attgcattgttgtgcctaa 294  Q
    |||||| |||||  ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||    
T  19198622 tatttgactatgcatttgccttaatgacgggttaataatatatttctttgtggtgccttagtggcgggataacatcatcatattgcattgttgtacctaa 19198523  T
Q  295 gtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttat 370  Q
    ||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  19198522 gtggcggaatttaatcttcatttttatgatcatgcattaacatatgcatctgtgtggtgcctgtgtggcgggttat 19198447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 35762139 - 35761918
Alignment:
Q  18 atatgatgtttgtatgataatgttatgtggaatgacatttatttt-----tctattcatacatgtttctgtggtattgtaaa-gaagtgttagactttgc 111  Q
    ||||||||| |||||||||||||||||||||||||||||||||||     ||||| |||| |||||| ||||||||||| || ||||||||||||||||     
T  35762139 atatgatgtgtgtatgataatgttatgtggaatgacatttattttatttttctatgcatatatgtttttgtggtattgttaatgaagtgttagactttgt 35762040  T
Q  112 tgataaactaaataaatgaaaatat--------gagttttatgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttg 203  Q
     ||||||||||||||||||||||||        | ||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||    
T  35762039 agataaactaaataaatgaaaatatagaaatatgtgttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaatatttgactgtatttg 35761940  T
Q  204 tctatgagtttgccttagtggc 225  Q
     |||||||||||||||||||||    
T  35761939 cctatgagtttgccttagtggc 35761918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 251 - 366
Target Start/End: Original strand, 16075097 - 16075211
Alignment:
Q  251 tgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtg 350  Q
    ||||||| ||||||| ||| |||||||| | |||| |||||| ||||||||||||||   | |||||||||||||||||| | ||| |||||||||||||    
T  16075097 tgccttaatggcgggttaatatcatattactttgtggtgcctgagtggcgggatttaggatgcattttcatgatcatgca-tggcaaatgcatctgtgtg 16075195  T
Q  351 gtgcctttgtggcggg 366  Q
    ||| ||| ||||||||    
T  16075196 gtgtcttagtggcggg 16075211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 366
Target Start/End: Complemental strand, 9537206 - 9537128
Alignment:
Q  287 gtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    |||||| ||||||||| |||| ||| |||||||||||||||||| | |||||||||| ||||||||||||| ||||||||    
T  9537206 gtgccttagtggcgggttttagtctacattttcatgatcatgca-tggcatatgcatttgtgtggtgccttagtggcggg 9537128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 366
Target Start/End: Complemental strand, 43407182 - 43407104
Alignment:
Q  287 gtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    |||||| ||||||||| |||| | | |||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  43407182 gtgccttagtggcgggttttagtttgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 43407104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 6836246 - 6836308
Alignment:
Q  240 tttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcggg 302  Q
    ||||| ||||||||||| ||||||||  || ||||||||||||||||||||||||||||||||    
T  6836246 tttctatgtggtgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggcggg 6836308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 371
Target Start/End: Complemental strand, 18472677 - 18472620
Alignment:
Q  313 cattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttatt 371  Q
    ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  18472677 cattttcatgatcatgcat-agcatatgcatctgtgtggtgcctgtatggcgggttatt 18472620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 354
Target Start/End: Original strand, 26317615 - 26317677
Alignment:
Q  292 taagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgc 354  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||| |||| |||| ||||    
T  26317615 taagtggcggaatttagtcttcattttcatgatcatgcattagcatatacatcagtgttgtgc 26317677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 368
Target Start/End: Original strand, 28561778 - 28561890
Alignment:
Q  257 agtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgca--tctgtgtggtgc 354  Q
    |||||| || ||| |||||||| | |||| |||  |||||||||||||||||| ||||||||||||||||||||| |  |||||||  ||||||||||||    
T  28561778 agtggcaggttaatatcatatttctttgtggtgtttaagtggcgggatttaattttcattttcatgatcatgcatga-tatatgcatttctgtgtggtgc 28561876  T
Q  355 ctttgtggcgggtt 368  Q
    ||| ||||| ||||    
T  28561877 cttagtggcaggtt 28561890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 366
Target Start/End: Original strand, 338431 - 338577
Alignment:
Q  213 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatctt 312  Q
    ||||||||||||||||||||||     |||||| ||||||||| | ||||||| ||  || |||||   | || |||||| ||||||||| |||| | |     
T  338431 ttgccttagtggcgggttaata-----tttcttagtggtgcctaactggcgggttataattatattttgt-gtggtgccttagtggcgggttttagtttg 338524  T
Q  313 cattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    |||||||||||||||||||   ||||||||||||||||||||||| ||||||||    
T  338525 cattttcatgatcatgcatgt-catatgcatctgtgtggtgccttagtggcggg 338577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 9537445 - 9537402
Alignment:
Q  18 atatgatgtttgtatgataatgttatgtggaatgacatttattt 61  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  9537445 atatgatgtttgtatgataatgttatgtagaatgacatttattt 9537402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 287 - 365
Target Start/End: Original strand, 8421953 - 8422030
Alignment:
Q  287 gtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgg 365  Q
    |||||| || |||||| |||| ||| |||||||||||||||||| | |||||||||||| ||||||||||| |||||||    
T  8421953 gtgccttagcggcgggttttagtctgcattttcatgatcatgca-tggcatatgcatctatgtggtgccttagtggcgg 8422030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 6836394 - 6836449
Alignment:
Q  314 attttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttat 370  Q
    |||||| |||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  6836394 attttcctgatcatgcatg-gcatatgcatctgtgtggtgcctgtgtggcgggttat 6836449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 362
Target Start/End: Original strand, 25921874 - 25921953
Alignment:
Q  282 ttgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtgg 362  Q
    |||| ||||||||||| ||||||||  | | ||||||||||||||| ||| | ||||||||||||||||||||||| ||||    
T  25921874 ttgtggtgcctaagtgacgggattttgtttacattttcatgatcatacatga-catatgcatctgtgtggtgccttagtgg 25921953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 16075096 - 16075150
Alignment:
Q  213 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggat 267  Q
    |||||||| |||||||||||||  ||||| ||||||||||||| |||||||||||    
T  16075096 ttgccttaatggcgggttaatatcatattactttgtggtgcctgagtggcgggat 16075150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 366
Target Start/End: Complemental strand, 33007449 - 33007388
Alignment:
Q  304 tttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    |||| ||| ||||||||| ||||||||| |||||||||||||||||||||| || ||||||||    
T  33007449 tttagtctacattttcataatcatgcat-agcatatgcatctgtgtggtgctttagtggcggg 33007388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 16074987 - 16075067
Alignment:
Q  127 atgaaaatatgagttttatgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtcta 207  Q
    |||||||| ||||||| |||||||||||    |||| | ||||||||| ||||||||||||| ||| ||||| ||||||||    
T  16074987 atgaaaatgtgagtttcatgaaaatattgacttttgattcatgtggataatgatgtgttaatctcttactgtgtttgtcta 16075067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 9001 - 9279
Alignment:
Q  18 atatgatgtttgtatgataatgttatgtggaatgacatttatttt------tctattcatacatgtttctgtggtattgtaaagaagtgttagactttgc 111  Q
    ||||||||| |||||||||||||||||||||||||||||||||||      |||||||||| |||||| |||||||||||||||||||||||||||||||    
T  9001 atatgatgtctgtatgataatgttatgtggaatgacatttattttattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgc 9100  T
Q  112 tgataaactaaataaatgaaaatatgagttttatgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgag 211  Q
    |||||||||||||||||||                 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9101 tgataaactaaataaatga-----------------aaatatttcagattggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgag 9183  T
Q  212 tttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggattta 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||    
T  9184 tttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggtttta 9279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 536975 - 537289
Alignment:
Q  18 atatgatgtttgtatgataatgttatgtggaatgacatttatttttctattcatacatgtttctgtggtattgtaaagaagtgttagactttgctgataa 117  Q
    ||||||||| |||||||||||||||||||||||| |||||   |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  536975 atatgatgtctgtatgataatgttatgtggaatggcattt---tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataa 537071  T
Q  118 actaaataaatgaaaatatgagttttatgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgcc 217  Q
    |||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  537072 actaaataaatga-----------------aaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgcc 537154  T
Q  218 ttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattt 317  Q
    ||||||||||||||||||||||||||||||||             ||||||||||||||||||||| |||||||| ||||||||| |||| | | |||||    
T  537155 ttagtggcgggttaataatatatttctttgtg-------------gggataacatcatattgcattattgtgccttagtggcgggttttagtgtgcattt 537241  T
Q  318 tcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    ||||| || |||| | |||||||||||||||||||||||| ||||||||    
T  537242 tcatgttcgtgca-tggcatatgcatctgtgtggtgccttagtggcggg 537289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 92 - 371
Target Start/End: Complemental strand, 4557979 - 4557689
Alignment:
Q  92 aaagaagtgttagactttgctgataaactaaataaatgaaaatat--------gagttttatgaaaatatttcagtttggtccatgtggatgatgatgtg 183  Q
    ||||||||||| || |||| |||||||||||| ||||||||||||        ||||||||||||||||||||| |||||| ||||||||||||||| ||    
T  4557979 aaagaagtgttggattttgttgataaactaaagaaatgaaaatatataaatatgagttttatgaaaatatttcattttggttcatgtggatgatgatatg 4557880  T
Q  184 ttaatatctgactgtatttgtctatgagtttgccttagtggcgggt--taataatatatttctttgtggtgccttagtggcgggataacatcatattgca 281  Q
    |||||| |||| ||| ||||  |||||| |||||||||||||||||  ||||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  4557879 ttaatacctgattgtgtttgcttatgaggttgccttagtggcgggtattaataatatatttctgtgtggtgccttagtggcgcgataatatcatattgca 4557780  T
Q  282 ttgttgtgcctaagtggcgggatttaatcttcatt-ttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttatt 371  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  4557779 ttgttgtgcctaagtggctggatttagtcttcattgttcatgatcatgcattagcatatgcatctctgtggtgcctgtgtggcgggttatt 4557689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 6309116 - 6309184
Alignment:
Q  214 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcatt 283  Q
    |||||||||||||||||| || |||||| || |||||||||||||||||||| ||| |||||||||||||    
T  6309116 tgccttagtggcgggttactattatatt-ctgtgtggtgccttagtggcgggttaatatcatattgcatt 6309184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 352
Target Start/End: Original strand, 30910117 - 30910253
Alignment:
Q  213 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcat-tgttgtgcctaagtggcgggatttaatct 311  Q
    |||||||||||||  |||||||  ||||||||| ||||||||| ||||||||| ||  || |||||  || ||| |||||| |||||||| ||||| |||    
T  30910117 ttgccttagtggcaagttaatatcatatttcttagtggtgcctaagtggcgggttataattatatt--atgtgtggtgccttagtggcgg-atttagtct 30910213  T
Q  312 tcattttcatgatcatgcattagcatatgcatctgtgtggt 352  Q
     ||||| |||||||||||| | |||||||||||||||||||    
T  30910214 gcatttccatgatcatgca-tggcatatgcatctgtgtggt 30910253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 38001301 - 38001437
Alignment:
Q  213 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatctt 312  Q
    |||||||||||||||||||||| ||||| ||  |||||||| ||||||||| | ||  || ||||| |  ||| ||| || ||||||||| ||||||||     
T  38001301 ttgccttagtggcgggttaatattatatatccgtgtggtgctttagtggcgagttataattatatt-ctgtgtggtgtcttagtggcgggttttaatctg 38001399  T
Q  313 cattttcatgatcatgcattagcatatgcatctgtgtggtg 353  Q
    |||||||||||||  |||| | |||||||||||||||||||    
T  38001400 cattttcatgatc--gcatga-catatgcatctgtgtggtg 38001437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 371
Target Start/End: Complemental strand, 25101671 - 25101612
Alignment:
Q  311 ttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttatt 371  Q
    |||||||||||||||||||||  | ||||||||||||||||||||| ||||||||||||||    
T  25101671 ttcattttcatgatcatgcatg-gtatatgcatctgtgtggtgcctgtgtggcgggttatt 25101612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 371
Target Start/End: Complemental strand, 25160764 - 25160705
Alignment:
Q  311 ttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttatt 371  Q
    |||||||||||||||||||||  | ||||||||||||||||||||| ||||||||||||||    
T  25160764 ttcattttcatgatcatgcatg-gtatatgcatctgtgtggtgcctgtgtggcgggttatt 25160705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 351
Target Start/End: Original strand, 42861769 - 42861869
Alignment:
Q  250 gtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgt 349  Q
    |||||||||||||||| |||  | ||| | | |||| ||||||| ||||||||||| |   | ||||||||||||||||||| |||||||||||||||||    
T  42861769 gtgccttagtggcgggttaaacttataattctttgtggtgcctatgtggcgggattcatgatccattttcatgatcatgcat-agcatatgcatctgtgt 42861867  T
Q  350 gg 351  Q
    ||    
T  42861868 gg 42861869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 6309186 - 6309241
Alignment:
Q  314 attttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttat 370  Q
    ||||||||||||||||||  |||||||||||||||||||| || |||||||||||||    
T  6309186 attttcatgatcatgcatg-gcatatgcatctgtgtggtgtctgtgtggcgggttat 6309241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 104702 - 104745
Alignment:
Q  314 attttcatgatcatgcattagcatatgcatctgtgtggtgcctt 357  Q
    ||||||||||||||| |||||||||||||||| |||||||||||    
T  104702 attttcatgatcatgtattagcatatgcatctctgtggtgcctt 104745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 40691266 - 40691335
Alignment:
Q  287 gtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctt 357  Q
    |||||| |||| |||| |||| ||| ||||||||||||||||||   ||||||||||||||||||||||||    
T  40691266 gtgccttagtgacgggttttagtctgcattttcatgatcatgca-aggcatatgcatctgtgtggtgcctt 40691335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 6308999 - 6309049
Alignment:
Q  240 tttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgc 290  Q
    ||||| ||||||||||| ||||||||  || ||||||||||||||||||||    
T  6308999 tttctgtgtggtgcctttgtggcgggtaaatatcatattgcattgttgtgc 6309049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 42861770 - 42861823
Alignment:
Q  214 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggat 267  Q
    |||||||||||||||||||   |||| |||||||||||||||  ||||||||||    
T  42861770 tgccttagtggcgggttaaacttataattctttgtggtgcctatgtggcgggat 42861823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 6309083 - 6309130
Alignment:
Q  217 cttagtggcgggttaataatatatttctttgtggtgccttagtggcggg 265  Q
    ||||||||||||||| || |||||| || ||||||||||||||||||||    
T  6309083 cttagtggcgggttactattatatt-ctgtgtggtgccttagtggcggg 6309130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 15874026 - 15873712
Alignment:
Q  18 atatgatgtttgtatgataatgttatgtggaatgacatttatttttctattcatacatgtttctgtggtattgtaaagaagtgttagactttgctgataa 117  Q
    ||||||| | |||||||||||||| ||||||||| |||||   |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  15874026 atatgatatctgtatgataatgttttgtggaatggcattt---tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataa 15873930  T
Q  118 actaaataaatgaaaatatgagttttatgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgcc 217  Q
    |||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15873929 actaaataaatgaaaatat-----------------ttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttgtctatgagtttgcc 15873847  T
Q  218 ttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattt 317  Q
    || |||||||||||||||||||||||||||||             ||||||||||||||||||||| |||||||| ||||||||| |||| | | |||||    
T  15873846 ttcgtggcgggttaataatatatttctttgtg-------------gggataacatcatattgcattattgtgccttagtggcgggttttagtgtgcattt 15873760  T
Q  318 tcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    ||||| || |||| | |||||||||||||||||||||||| ||||||||    
T  15873759 tcatgttcgtgca-tggcatatgcatctgtgtggtgccttagtggcggg 15873712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 198 - 371
Target Start/End: Original strand, 22077977 - 22078150
Alignment:
Q  198 tatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 297  Q
    |||||| |||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22077977 tatttgactatgcatttgccttagtggcgggttaataatatatctctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 22078076  T
Q  298 gcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttatt 371  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  22078077 gcgggatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcgtgttatt 22078150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 198 - 371
Target Start/End: Complemental strand, 21491353 - 21491179
Alignment:
Q  198 tatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 297  Q
    |||||| |||||  ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  21491353 tatttgactatgcatttgccttagtggtgggttaataatatatttctgtgtggtgccttagtggcgggagaatatcatattgcattgttgtgcctaagtg 21491254  T
Q  298 gcgggatttaatcttcatt-ttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttatt 371  Q
    || ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  21491253 gctggatttagtcttcattgttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcgtgttatt 21491179  T

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Target: chr7; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 212 - 371
Target Start/End: Complemental strand, 18367173 - 18367013
Alignment:
Q  212 tttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatct 311  Q
    |||| ||||| ||||||||||||||| |||||| ||||||||||||||||| |||||| |||||||||||||||||| |||||||||| |||||||||||    
T  18367173 tttgtcttaggggcgggttaataatagatttctgtgtggtgccttagtggcaggataatatcatattgcattgttgtccctaagtggctggatttaatct 18367074  T
Q  312 tcatt-ttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttatt 371  Q
    ||||| |||||||||| ||||||||||||| || |||||||||| |  |||| ||||||||    
T  18367073 tcattgttcatgatcacgcattagcatatgtatttgtgtggtgcatgggtggtgggttatt 18367013  T

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Target: chr7; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 238 - 366
Target Start/End: Complemental strand, 11036210 - 11036083
Alignment:
Q  238 tatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcat 337  Q
    ||||||| ||||||||||| |||||| |  || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11036210 tatttctgtgtggtgcctt-gtggcgagtaaatatcatattgcattgttgtgcctaagtggcgggatttagtcttcattttcatgatcatgcattagcat 11036112  T
Q  338 atgcatctgtgtggtgcctttgtggcggg 366  Q
    |||||||| ||||||||||| ||||||||    
T  11036111 atgcatctctgtggtgccttagtggcggg 11036083  T

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Target: chr7; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 21491503 - 21491358
Alignment:
Q  92 aaagaagtgttagactttgctgataaactaaataaatgaaaatat--------gagttttatgaaaatatttcagtttggtccatgtggatgatgatgtg 183  Q
    ||||||||||| || |||| |||||||||||| ||||||||||||        ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  21491503 aaagaagtgttggattttgttgataaactaaagaaatgaaaatatagtaatatgagttttatgaaaatatttcattttggttcatgtggatgatgatgtg 21491404  T
Q  184 ttaatatctgactgtatttgtctatgagtttgccttagtggcgggt 229  Q
    ||||||||| | ||| ||||  |||||| |||||||||||||||||    
T  21491403 ttaatatcttattgtgtttgcttatgaggttgccttagtggcgggt 21491358  T

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Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 18367337 - 18367192
Alignment:
Q  92 aaagaagtgttagactttgctgataaactaaataaatgaaaatat--------gagttttatgaaaatatttcagtttggtccatgtggatgatgatgtg 183  Q
    ||||||||||| || |||| |||||||||||| ||||||||||||        ||| ||||| ||||||||||| |||||| ||| ||||||||||||||    
T  18367337 aaagaagtgttggattttgttgataaactaaagaaatgaaaatatagaaatatgagatttataaaaatatttcattttggttcatatggatgatgatgtg 18367238  T
Q  184 ttaatatctgactgtatttgtctatgagtttgccttagtggcgggt 229  Q
    |||||| |||| ||| ||||  |||||| |||||||||||||||||    
T  18367237 ttaatacctgattgtgtttggttatgaggttgccttagtggcgggt 18367192  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 371
Target Start/End: Complemental strand, 48653649 - 48653529
Alignment:
Q  250 gtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgt 349  Q
    |||||||||||||||| |||  | ||| | | |||| ||||||||||||||||||| |   | ||||||||||||||||||| | |||||||||||||||    
T  48653649 gtgccttagtggcgggttaaacttataattctttgtggtgcctaagtggcgggattcatgatccattttcatgatcatgcataa-catatgcatctgtgt 48653551  T
Q  350 ggtgcctttgtggcgggttatt 371  Q
    |||| || ||||||||||||||    
T  48653550 ggtgtctgtgtggcgggttatt 48653529  T

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Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 9993633 - 9993702
Alignment:
Q  238 tatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggattta 307  Q
    ||||||| ||||||||||| |||| |||  || |||||||||||||||||||||||||||||||||||||    
T  9993633 tatttctgtgtggtgcctttgtggtgggtaaatatcatattgcattgttgtgcctaagtggcgggattta 9993702  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 362
Target Start/End: Complemental strand, 12911581 - 12911434
Alignment:
Q  213 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatctt 312  Q
    ||||||||||| | ||||||||  ||||||||| ||||||||| ||||||||| ||  || ||||| |  ||| || ||| ||||||||| |||| |||     
T  12911581 ttgccttagtgacaggttaatatcatatttcttagtggtgcctaagtggcgggttataattatatt-ctgtgtggtaccttagtggcgggttttagtctg 12911483  T
Q  313 cattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtgg 362  Q
    ||||||||| |||||| ||  |||||||||||||||||||||||| ||||    
T  12911482 cattttcataatcatgtatg-gcatatgcatctgtgtggtgccttagtgg 12911434  T

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Target: chr7; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 366
Target Start/End: Complemental strand, 10288606 - 10288528
Alignment:
Q  287 gtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    |||||| ||||||||| |||| | | |||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  10288606 gtgccttagtggcgggttttagtttgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 10288528  T

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Target: chr7; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 366
Target Start/End: Original strand, 40106201 - 40106279
Alignment:
Q  287 gtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    |||||| ||||||||  |||| ||| |||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  40106201 gtgccttagtggcggattttagtctgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 40106279  T

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Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 366
Target Start/End: Complemental strand, 12196547 - 12196433
Alignment:
Q  251 tgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtg 350  Q
    ||||||||||| ||| ||| || ||||  |  ||| |||||| ||||||||  |||| ||| ||||||||||||||| || | |||||| ||||||||||    
T  12196547 tgccttagtggtgggttaatattatatatctgtgtggtgccttagtggcggactttagtctgcattttcatgatcataca-tggcatattcatctgtgtg 12196449  T
Q  351 gtgcctttgtggcggg 366  Q
    ||||||| ||||||||    
T  12196448 gtgccttagtggcggg 12196433  T

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Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 12196548 - 12196497
Alignment:
Q  213 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgg 264  Q
    |||||||||||| ||||||||| ||||| ||| |||||||||||||||||||    
T  12196548 ttgccttagtggtgggttaatattatatatctgtgtggtgccttagtggcgg 12196497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 370
Target Start/End: Original strand, 9993756 - 9993836
Alignment:
Q  289 gcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttat 370  Q
    ||||||||||||||||||| | |||||| |||| |||||||| | |||||||||  | |||||||||| |||| ||||||||    
T  9993756 gcctaagtggcgggatttagttttcattatcattatcatgca-tggcatatgcacgtttgtggtgcctgtgtgacgggttat 9993836  T

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Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 48653648 - 48653595
Alignment:
Q  214 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggat 267  Q
    |||||||||||||||||||   |||| ||||||||||||||| |||||||||||    
T  48653648 tgccttagtggcgggttaaacttataattctttgtggtgcctaagtggcgggat 48653595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 22077792 - 22077831
Alignment:
Q  18 atatgatgtttgtatgataatgttatgtggaatgacattt 57  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  22077792 atatgatgtgtgtatgataatgttatgtagaatgacattt 22077831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 363
Target Start/End: Complemental strand, 49170111 - 49170042
Alignment:
Q  294 agtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtgg-tgcctttgtggc 363  Q
    ||||||||  |||| ||| |||||||||||||||||| | |||||||||||||||||| |||||| |||||    
T  49170111 agtggcggattttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtggatgccttagtggc 49170042  T

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Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 198 - 371
Target Start/End: Original strand, 49499403 - 49499577
Alignment:
Q  198 tatttgtctatgagtttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 297  Q
    |||||| |||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||| |||||||||||||    
T  49499403 tatttgactatgcatttgccttagtggcgggttaataatatatttctgtgtggtgccttagtggcgggatgatatcatattgcatttttgtgcctaagtg 49499502  T
Q  298 gcgggatttaatcttcatt-ttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttatt 371  Q
    || ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49499503 gctggatttagtcttcattgttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcgggttatt 49499577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 92 - 229
Target Start/End: Original strand, 49499253 - 49499398
Alignment:
Q  92 aaagaagtgttagactttgctgataaactaaataaatgaaaat--------atgagttttatgaaaatatttcagtttggtccatgtggatgatgatgtg 183  Q
    ||||||||||| || |||| |||||||||||| ||||||||||        ||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  49499253 aaagaagtgttggattttgttgataaactaaagaaatgaaaatatagaaatatgagttttatgaaaatatttcattttggttcatgtggatgatgatgtg 49499352  T
Q  184 ttaatatctgactgtatttgtctatgagtttgccttagtggcgggt 229  Q
    |||||| || | ||| ||||  |||||| |||||||||||||||||    
T  49499353 ttaatacctaattgtgtttgcttatgaggttgccttagtggcgggt 49499398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 366
Target Start/End: Original strand, 40459293 - 40459420
Alignment:
Q  237 atatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagca 336  Q
    ||||||||| ||||||||| ||||||||| ||  || |||||  || ||||||||| ||||||||| ||||   | |||||||||||||||||||   ||    
T  40459293 atatttcttagtggtgcctaagtggcgggttataattatattctat-gttgtgccttagtggcgggttttaggttgcattttcatgatcatgcatgt-ca 40459390  T
Q  337 tatgcatctgtgtggtgcctttgtggcggg 366  Q
    ||||||||||||||||||||| ||||||||    
T  40459391 tatgcatctgtgtggtgccttagtggcggg 40459420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 371
Target Start/End: Complemental strand, 2761911 - 2761792
Alignment:
Q  251 tgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtg 350  Q
    ||||||||||| ||| | | ||||||||   |||| |||| ||||||| ||||||||   |||||||||||||||||||| | |||||||||| ||||||    
T  2761911 tgccttagtggtgggttgatatcatattattttgtggtgcttaagtggtgggatttaggattcattttcatgatcatgca-tggcatatgcatttgtgtg 2761813  T
Q  351 gtgcctttgtggcgggttatt 371  Q
    ||||||| |||| ||||||||    
T  2761812 gtgccttagtggagggttatt 2761792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 69628 - 69690
Alignment:
Q  240 tttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcggg 302  Q
    ||||| ||||||||||| ||||||||  || ||||||||||||||||||||||||||||||||    
T  69628 tttctgtgtggtgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggcggg 69690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 69782 - 69837
Alignment:
Q  314 attttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttat 370  Q
    ||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  69782 attttcatgatcatgcatg-gcatatgcatctgtgtggtgcctgtgtggcgggttat 69837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 287 - 366
Target Start/End: Complemental strand, 28969059 - 28968976
Alignment:
Q  287 gtgcctaagtggcgggatttaatcttcattttcatgatcatgcat----tagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    |||||| |||||  || |||||||| |||||||||||||||||||    | |||||||||||||||||||||||| ||||||||    
T  28969059 gtgccttagtggtaggttttaatctgcattttcatgatcatgcatggcatggcatatgcatctgtgtggtgccttagtggcggg 28968976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 55162562 - 55162623
Alignment:
Q  304 tttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    |||| ||| |||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  55162562 tttagtctgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 55162623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 69712 - 69780
Alignment:
Q  214 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcatt 283  Q
    ||||||||||||||||||  | |||||| || |||||||||||||||||||| ||| |||||||||||||    
T  69712 tgccttagtggcgggttacgattatatt-ctgtgtggtgccttagtggcgggttaatatcatattgcatt 69780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 364
Target Start/End: Original strand, 13652928 - 13653002
Alignment:
Q  290 cctaagtggcgggatttaatctt-cattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcg 364  Q
    ||||||||||||| |||| |||| |||||||||||||||||||  | |||||||| ||||||||||||| ||||||    
T  13652928 cctaagtggcgggttttagtcttgcattttcatgatcatgcatg-gtatatgcatttgtgtggtgccttagtggcg 13653002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 364
Target Start/End: Original strand, 13661053 - 13661127
Alignment:
Q  290 cctaagtggcgggatttaatctt-cattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcg 364  Q
    ||||||||||||| |||| |||| |||||||||||||||||||  | |||||||| ||||||||||||| ||||||    
T  13661053 cctaagtggcgggttttagtcttgcattttcatgatcatgcatg-gtatatgcatttgtgtggtgccttagtggcg 13661127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 28969272 - 28969228
Alignment:
Q  18 atatgatgtttgtatgataatgttatgtggaatgacatttatttt 62  Q
    ||||||||| ||||||||||| |||||| ||||||||||||||||    
T  28969272 atatgatgtgtgtatgataattttatgtagaatgacatttatttt 28969228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 42899960 - 42899903
Alignment:
Q  314 attttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttatt 371  Q
    |||||||| |||||||||||  ||||||||||||||||||| ||  |||||| |||||    
T  42899960 attttcataatcatgcattaatatatgcatctgtgtggtgctttaatggcggattatt 42899903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 258 - 371
Target Start/End: Complemental strand, 40841322 - 40841209
Alignment:
Q  258 gtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctt 357  Q
    ||||||||  || ||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  40841322 gtggcgggtaaatatcatattgcattgttgtgcctatgttgcgggatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctg 40841223  T
Q  358 tgtggcgggttatt 371  Q
    |||||||| |||||    
T  40841222 tgtggcggcttatt 40841209  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 371
Target Start/End: Original strand, 44436442 - 44436596
Alignment:
Q  214 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttc 313  Q
    ||||||||| ||||||||  | |||||| || |||||||||||||| ||||| ||  || ||||| |  ||| |||||| ||||| ||| |||| |||      
T  44436442 tgccttagttgcgggttataattatatt-ctgtgtggtgccttagttgcgggttataattatatt-ctgtgtggtgccttagtggtgggttttagtctct 44436539  T
Q  314 attttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttatt 371  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||||||||| ||||    
T  44436540 attttcatgatcatgc-ttggcatatgcatctgtgtggtgcctgtgtggcgggatatt 44436596  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 371
Target Start/End: Complemental strand, 22635774 - 22635715
Alignment:
Q  311 ttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttatt 371  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| ||||||| ||||||    
T  22635774 ttcattttcatgatcatgcatg-gcatatgcatctgtgtggtgcctgtgtggcgagttatt 22635715  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 366
Target Start/End: Complemental strand, 41958220 - 41958159
Alignment:
Q  304 tttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    |||| ||| |||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  41958220 tttagtctgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 41958159  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 35840649 - 35840710
Alignment:
Q  238 tatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggc 299  Q
    ||||||| ||| ||||||| ||||||||  || |||||||||||||||||||||||||||||    
T  35840649 tatttctgtgtcgtgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggc 35840710  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 370
Target Start/End: Complemental strand, 3189181 - 3189123
Alignment:
Q  311 ttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttat 370  Q
    ||||||||||||||||||||| | ||||||||| |||||||||| | |||||||||||||    
T  3189181 ttcattttcatgatcatgcatga-catatgcatttgtgtggtgcttgtgtggcgggttat 3189123  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 22816064 - 22816008
Alignment:
Q  314 attttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttatt 371  Q
    ||||||||||||||||||  ||||||||||||||| ||||||| ||| ||||||||||    
T  22816064 attttcatgatcatgcatg-gcatatgcatctgtgcggtgcctgtgtagcgggttatt 22816008  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 35840736 - 35840780
Alignment:
Q  287 gtgcctaagtggcgggatttaatcttcattttcatgatcatgcat 331  Q
    ||||||||||||||||||||| | |||||| |||| |||||||||    
T  35840736 gtgcctaagtggcgggatttagttttcattatcattatcatgcat 35840780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 213 - 366
Target Start/End: Complemental strand, 18292582 - 18292431
Alignment:
Q  213 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatctt 312  Q
    |||||||||||| ||||||||| ||||| ||| || ||||||||||||||||| ||  || |||||   | || |||||| ||||||||| |||| |||     
T  18292582 ttgccttagtggtgggttaatattatatatctgtggggtgccttagtggcgggttataattatattttgt-gtggtgccttagtggcgggttttagtctg 18292484  T
Q  313 cattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    |||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  18292483 cattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtggcggg 18292431  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 250 - 351
Target Start/End: Complemental strand, 28266964 - 28266864
Alignment:
Q  250 gtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgt 349  Q
    ||||||||||||||| |||| ||||||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||| | |||||||||||| |||    
T  28266964 gtgccttagtggcggcataatatcatattgcattgttgtgcctgtgtggcgggatttagtcttcattttaatgatcatgca-tggcatatgcatctatgt 28266866  T
Q  350 gg 351  Q
    ||    
T  28266865 gg 28266864  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 250 - 371
Target Start/End: Complemental strand, 12774244 - 12774122
Alignment:
Q  250 gtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgt 349  Q
    |||||||||||||||||||| |||||||  | |||| ||||||||||||||||||| |   |||||||||||||||||||| | ||||||||||||||||    
T  12774244 gtgccttagtggcgggataatatcatatctctttgtggtgcctaagtggcgggattcatgattcattttcatgatcatgca-tcgcatatgcatctgtgt 12774146  T
Q  350 ggtgcct--ttgtggcgggttatt 371  Q
    |||||||  | |||||||||||||    
T  12774145 ggtgccttatagtggcgggttatt 12774122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 332
Target Start/End: Original strand, 29270993 - 29271079
Alignment:
Q  246 tgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcatt 332  Q
    |||||||||||||||| ||| ||| |||||||||| |||  ||||||||||| ||||||||||| ||||||||||||||||||||||    
T  29270993 tgtggtgccttagtggtgggttaatatcatattgctttggggtgcctaagtgacgggatttaattttcattttcatgatcatgcatt 29271079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 362
Target Start/End: Complemental strand, 40729242 - 40729168
Alignment:
Q  287 gtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtgg 362  Q
    |||||| ||||||||| |||| ||| |||||||||||||||||| | |||||||||||||||||||||||| ||||    
T  40729242 gtgccttagtggcgggttttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtggtgccttagtgg 40729168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 366
Target Start/End: Complemental strand, 41340068 - 41339990
Alignment:
Q  287 gtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    |||||| ||||||||| |||| ||||||||||||||| |||||| | ||||||||| |||||||||||||| ||||||||    
T  41340068 gtgccttagtggcgggttttagtcttcattttcatgaccatgca-tggcatatgcacctgtgtggtgccttagtggcggg 41339990  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 366
Target Start/End: Original strand, 40447804 - 40447950
Alignment:
Q  213 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatctt 312  Q
    ||||||||||||||||||||||     |||||| ||||||||| | ||||||| ||  || |||||   | || |||||| ||||||||| |||| | |     
T  40447804 ttgccttagtggcgggttaata-----tttcttagtggtgcctaactggcgggttataattatattttgt-gtggtgccttagtggcgggttttagtttg 40447897  T
Q  313 cattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcggg 366  Q
    |||||||||||||||||||   ||||||||||||||||||||||| ||||||||    
T  40447898 cattttcatgatcatgcatgt-catatgcatctgtgtggtgccttagtggcggg 40447950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 362
Target Start/End: Complemental strand, 35670604 - 35670493
Alignment:
Q  250 gtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgt 349  Q
    |||||||||||||||| |||  | ||| | | |||| ||||||| ||||||||||| |   | ||||||||||||||||||| |||||||||||||||||    
T  35670604 gtgccttagtggcgggttaaacttataattctttgtggtgcctatgtggcgggattcatgatccattttcatgatcatgcat-agcatatgcatctgtgt 35670506  T
Q  350 ggtgcctttgtgg 362  Q
    |||| || |||||    
T  35670505 ggtgtctgtgtgg 35670493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 44789002 - 44789057
Alignment:
Q  314 attttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttat 370  Q
    |||||||||||||||||   ||||||||||||||||||||||| |||||||||||||    
T  44789002 attttcatgatcatgcaag-gcatatgcatctgtgtggtgcctgtgtggcgggttat 44789057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 12774243 - 12774190
Alignment:
Q  214 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggat 267  Q
    ||||||||||||||| |||||  |||| |||||||||||||| |||||||||||    
T  12774243 tgccttagtggcgggataatatcatatctctttgtggtgcctaagtggcgggat 12774190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 44788932 - 44789000
Alignment:
Q  214 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcatt 283  Q
    ||||||||||| ||||||  | |||||| || |||||||||||||||||||| ||| |||||||||||||    
T  44788932 tgccttagtggagggttacaattatatt-ctgtgtggtgccttagtggcgggctaatatcatattgcatt 44789000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 44788866 - 44788910
Alignment:
Q  258 gtggcgggataacatcatattgcattgttgtgcctaagtggcggg 302  Q
    ||||||||  || ||||||||||||||||||||||||||||||||    
T  44788866 gtggcgggtaaatatcatattgcattgttgtgcctaagtggcggg 44788910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 36732043 - 36731989
Alignment:
Q  213 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggat 267  Q
    ||||||||| ||||||||||||  ||||||||| ||| ||||| |||||||||||    
T  36732043 ttgccttaggggcgggttaatatcatatttcttagtgatgcctaagtggcgggat 36731989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 34397632 - 34397559
Alignment:
Q  287 gtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggc 363  Q
    |||||| ||||||||| |||| ||| ||||  |||||||||||||  | |||||||||||||||||||||| |||||    
T  34397632 gtgccttagtggcgggttttagtctgcatt--catgatcatgcatg-gtatatgcatctgtgtggtgccttagtggc 34397559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 35670603 - 35670550
Alignment:
Q  214 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggat 267  Q
    |||||||||||||||||||   |||| |||||||||||||||  ||||||||||    
T  35670603 tgccttagtggcgggttaaacttataattctttgtggtgcctatgtggcgggat 35670550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 36731962 - 36731886
Alignment:
Q  293 aagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttat 370  Q
    ||||||||||||||| | || ||| |||| |||||||| | |||||||||| |||||| ||||| |||| ||||||||    
T  36731962 aagtggcgggatttagtttttattatcattatcatgca-tggcatatgcatttgtgtgctgcctgtgtgacgggttat 36731886  T

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Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 242783 - 242727
Alignment:
Q  314 attttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggttatt 371  Q
    |||||||||||| ||||| ||||||||||| |||||||||||| ||||||||||||||    
T  242783 attttcatgatcttgcat-agcatatgcatatgtgtggtgcctgtgtggcgggttatt 242727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 242936 - 242883
Alignment:
Q  246 tgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggc 299  Q
    ||||||||||| ||| ||||  || |||||||||||||||||||||| ||||||    
T  242936 tgtggtgcctttgtgacgggtaaatatcatattgcattgttgtgccttagtggc 242883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 335 - 379
Alignment:
Q  18 atatgatgtttgtatgataatgttatgtggaatgacatttatttt 62  Q
    ||||||||| |||||||||||||||||| ||||| ||||||||||    
T  335 atatgatgtgtgtatgataatgttatgtagaatgccatttatttt 379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 367
Target Start/End: Complemental strand, 33100 - 33027
Alignment:
Q  287 gtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctttgtggcgggt 367  Q
    ||||||||||||||||||||| | ||||||      ||||||||| | |||||||||||||||||||||| |||| |||||    
T  33100 gtgcctaagtggcgggatttagttttcatt------atcatgcatga-catatgcatctgtgtggtgcctgtgtgacgggt 33027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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