View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7983_low_7 (Length: 388)
Name: NF7983_low_7
Description: NF7983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7983_low_7 |
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| [»] chr8 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 41806650 - 41806281
Alignment:
| Q |
19 |
tgtgaatcatttttatgcatgtattgaatataaagaggattattgtcatatgtaggatacttatgtgacatcaatattcactagttgtttaggatcagaa |
118 |
Q |
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| T |
41806650 |
tgtgaatcatttttatgcatgtattgaatataaagaggattattgtcatatgtaggatacttatgtgacatcaatattcactagttgtttaggatcagaa |
41806551 |
T |
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| Q |
119 |
attaatatagactacatctagtacttttatttcatgctcaacgatgttagttagatcctaaatgcaagaatcacaggtcgcattcgatgggagttgcttt |
218 |
Q |
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| T |
41806550 |
attaatatagactacatctagtacttttatttcatgctcaacgatgggagttagatcctaaatgcaagaatcacaggtcgcattcgatgggagttgcttt |
41806451 |
T |
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| Q |
219 |
gaataccatgcaagttcacttgatcattagacaaacacaaaatgtaggtttctctcttctgaaccagaagagataaaacaagcagcacagaaaagtcagg |
318 |
Q |
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| T |
41806450 |
gaataccatgcaagttcacttgatcattagacaaacacaaaatgtaggtttctctcttctgaaccagaagagataaaacaagcagcacagaaaagtcagg |
41806351 |
T |
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| Q |
319 |
aaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttacta |
388 |
Q |
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| T |
41806350 |
aaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttacta |
41806281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 88 - 273
Target Start/End: Original strand, 42033969 - 42034154
Alignment:
| Q |
88 |
atcaatattcactagttgtttaggatcagaaattaatatagactacatctagtacttttatttcatgctcaacgatgttagttagatcctaaatg-caag |
186 |
Q |
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| T |
42033969 |
atcaatattcactagttgtttaggatcataaattattacagactacatctagtacttttatttcatgctcaatgatgggagttggatcataaatgccaag |
42034068 |
T |
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| Q |
187 |
aatcacaggtcgcattcgatgggagttgctttgaataccatgcaagttcacttgatcattagacaaacacaaaatgtaggtttctct |
273 |
Q |
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| T |
42034069 |
aatcacaggctacgtacaatgggagttgctttgaatgccaagcaagttcacttga-cattagacaaacacaagatgtaggtttctct |
42034154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 41800270 - 41800166
Alignment:
| Q |
275 |
ttctgaaccagaaga-gataaaacaagcagcacagaaaagtcaggaaaaa-gatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttcta |
372 |
Q |
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|||||||| |||||| ||||||||||| ||||||||||| |||||||||| ||||||||| || || ||||| || ||||||||||||| ||||||||| |
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| T |
41800270 |
ttctgaactagaagaagataaaacaagaagcacagaaaattcaggaaaaaagatgtaggagctcaaacgaggtagaaaaacacaagccgtgaatcttcta |
41800171 |
T |
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| Q |
373 |
aatat |
377 |
Q |
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||||| |
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| T |
41800170 |
aatat |
41800166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 314 - 388
Target Start/End: Complemental strand, 24632035 - 24631961
Alignment:
| Q |
314 |
tcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttacta |
388 |
Q |
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| T |
24632035 |
tcaggaaaaagatccaggagcttgaatgaggtagacagatacaagccacaaatcttctaaatatttcacttacta |
24631961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 386
Target Start/End: Complemental strand, 24685444 - 24685348
Alignment:
| Q |
290 |
gataaaacaagcagcacagaaaagtcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttac |
386 |
Q |
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| T |
24685444 |
gataaaaccagaagcagagagaattcaggaaaaagacctaggagctcgactgaggtagacaaacaaaagccgcgaatcttctaaatgttgcacttac |
24685348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 345
Target Start/End: Original strand, 278393 - 278464
Alignment:
| Q |
275 |
ttctgaaccagaagag-ataaaacaagcagcacagaaaagtcaggaaaaagatgtaggaacttgaatgaggt |
345 |
Q |
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| T |
278393 |
ttctgaaccagaagaggataaaaccacaagcacagaaaattcaggaaaaagatctaggagctcaaatgaggt |
278464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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