View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7983_low_8 (Length: 355)
Name: NF7983_low_8
Description: NF7983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7983_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 20841180 - 20840841
Alignment:
| Q |
1 |
gttgttttgatggagctaatgaaatggagatcagaaggactcgaccctctttatgcgcaagccgttcagatgaaacaaagagatccaatcaccgggaaga |
100 |
Q |
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| T |
20841180 |
gttgttttgatggagctaatgaaatggagatcagaaggactcgaccctctttatgcgcaagccgttcagatgaaacaaagagatccaatcaccgggaaga |
20841081 |
T |
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| Q |
101 |
tgaaagtcgcgaatcctctcagtagtcgacttgtttgggaaacatgtttgtgtgagttcaaatctttagggaagatagcagtgaggctcatttttcttca |
200 |
Q |
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| T |
20841080 |
tgaaagtcgcgaatcctctcagtagtcgacttgtttgggaaacatgtttgtgtgagttcaaatctttagggaagatagcagtgaggctcatttttcttca |
20840981 |
T |
|
| Q |
201 |
tgcaacttcatgtggatttaagagtaattggtctttcatgagaaaagtttctggaaacaaaaactctagagttgcattggaaagagctcagaaaatgata |
300 |
Q |
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| T |
20840980 |
tgcaacttcatgtggatttaagagtaattggtctttcatgagaaaagtttctggaaacaaaaactctagagttgcattggaaagagctcagaaaatgata |
20840881 |
T |
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| Q |
301 |
tacattgcagctcatgcaaagctcgaaagaagagattttt |
340 |
Q |
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| T |
20840880 |
tacattgcagctcatgcaaagcttgaaagaagagattttt |
20840841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 42255649 - 42255857
Alignment:
| Q |
10 |
atggagctaatgaaatggagatcagaaggactcgaccctctttatgcgcaagccgttcagatgaaacaaagagatccaatcaccgggaagatgaaagtcg |
109 |
Q |
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| T |
42255649 |
atggaactcatgaaatggagaacagaagggctcgatccggtttacgcgcaagccgtacaaatgaaggagagagatcctgttactgggaagatgaggattg |
42255748 |
T |
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| Q |
110 |
cgaatcctctcagtagtcgacttgtttgggaaacatgtttgtgtgagttcaaatctttagggaaga-tagcagtgaggctcatttttcttcatgcaactt |
208 |
Q |
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| T |
42255749 |
ctaatccacaaagtagtagacttgtttgggaaacttatttaactgaattcaaatcctta-ggaagagttgctgtgaggttaattttccttcatgcaactt |
42255847 |
T |
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| Q |
209 |
catgtggatt |
218 |
Q |
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| T |
42255848 |
cttgtggatt |
42255857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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