View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7984_high_11 (Length: 371)

Name: NF7984_high_11
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7984_high_11
NF7984_high_11
[»] chr6 (4 HSPs)
chr6 (1-360)||(23905960-23906318)
chr6 (7-99)||(23947898-23947990)
chr6 (22-99)||(18603075-18603152)
chr6 (280-327)||(25524515-25524562)
[»] chr8 (4 HSPs)
chr8 (7-114)||(17748325-17748432)
chr8 (6-105)||(260861-260960)
chr8 (6-105)||(654961-655060)
chr8 (6-105)||(840696-840795)
[»] chr7 (1 HSPs)
chr7 (7-146)||(15962879-15963018)
[»] chr2 (3 HSPs)
chr2 (27-107)||(24226712-24226792)
chr2 (29-118)||(20662075-20662164)
chr2 (7-98)||(37488954-37489046)
[»] chr4 (1 HSPs)
chr4 (7-71)||(25230048-25230113)
[»] chr1 (2 HSPs)
chr1 (29-105)||(20186033-20186112)
chr1 (8-49)||(17622277-17622318)
[»] chr5 (1 HSPs)
chr5 (8-80)||(33699582-33699654)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 23905960 - 23906318
Alignment:
Q  1 caaccgtccaatctcttcttatatcaaattcattttgatccatatttcagatcaccagatttgaacatcttttcacggttgagaagcagccaaaattttc 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  23905960 caaccgtccaatctcttcttatatcaaattcattttgatacatatttcagatcaccagatttgaacatcttttcatgtttgagaagcagccaaaattttc 23906059  T
Q  101 aaagggtgacaatccaaaaacgcttccttgtgaccattattcttacatcacaaaggaccattcaatcaagagaatataannnnnnnnactttgtttccaa 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||    
T  23906060 aaagggtgacaatccaaaaacccttccttgtgaccattattcttacatcacagaggaccattcaatcaagagaatataattttttttactttgtttccaa 23906159  T
Q  201 taaagatacaaatttggagggnnnnnnnnntgaacaaacctaacaaaatttagttgaagccaaagaaacacacttgcaaaagaaaatagaaactgaaatt 300  Q
    |||||||||||||||||||||         |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23906160 taaagatacaaatttggaggg-aaaaaaaatgaataaacctaacaaaatttagttgaagccaaagaaacacacttgcaaaagaaaatagaaactgaaatt 23906258  T
Q  301 gtaaagtaagaagatgaaagaaacaatcaacaacagtgaaaccttcatttctgatgtcca 360  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  23906259 gtaaagtaagaagaagaaagaaacaatcaacaacagtgaaaccttcatttctcatgtcca 23906318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 23947990 - 23947898
Alignment:
Q  7 tccaatctcttcttatatcaaattcattttgatccatatttcagatcaccagatttgaacatcttttcacggttgagaagcagccaaaatttt 99  Q
    |||||| | ||||| |||||||||||||||||| |||| ||||  ||| ||| | |||||||||| ||| |||||||||||||||||||||||    
T  23947990 tccaatttgttcttgtatcaaattcattttgatacatacttcatgtcatcagttctgaacatcttctcaaggttgagaagcagccaaaatttt 23947898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 18603152 - 18603075
Alignment:
Q  22 tatcaaattcattttgatccatatttcagatcaccagatttgaacatcttttcacggttgagaagcagccaaaatttt 99  Q
    |||||||||||||||||| |||| || ||||||||| || |||  ||||| |||  ||||||||||||||||||||||    
T  18603152 tatcaaattcattttgatacatacttaagatcaccatatctgaggatcttctcaaagttgagaagcagccaaaatttt 18603075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 327
Target Start/End: Original strand, 25524515 - 25524562
Alignment:
Q  280 aagaaaatagaaactgaaattgtaaagtaagaagatgaaagaaacaat 327  Q
    |||||||||||||||||||||||||| |||| |||  |||||||||||    
T  25524515 aagaaaatagaaactgaaattgtaaaataaggagaaaaaagaaacaat 25524562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 17748325 - 17748432
Alignment:
Q  7 tccaatctcttcttatatcaaattcattttgatccatatttcagatcaccagatttgaacatcttttcacggttgagaagcagccaaaattttcaaaggg 106  Q
    |||||||||||||| |||||||||||||||||| |||| |||  || |  | |||| |||||||| ||| |||||||||| |||||||||||||||||||    
T  17748325 tccaatctcttcttgtatcaaattcattttgatacatacttcgtataattatatttcaacatcttctcaaggttgagaagtagccaaaattttcaaaggg 17748424  T
Q  107 tgacaatc 114  Q
    | ||||||    
T  17748425 tcacaatc 17748432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 260861 - 260960
Alignment:
Q  6 gtccaatctcttcttatatcaaattcattttgatccatatttcagatcaccagatttgaacatcttttcacggttgagaagcagccaaaattttcaaagg 105  Q
    ||||||||||||||| ||||||||| |||| ||  ||||||| |||||  || || |||||||||| |||  ||||||||| ||| ||||||||||||||    
T  260861 gtccaatctcttcttgtatcaaattaatttggacacatattttagatcctcaaatctgaacatcttctcaaagttgagaaggagctaaaattttcaaagg 260960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 655060 - 654961
Alignment:
Q  6 gtccaatctcttcttatatcaaattcattttgatccatatttcagatcaccagatttgaacatcttttcacggttgagaagcagccaaaattttcaaagg 105  Q
    ||||||||||||||| ||||||||| |||| ||  ||||||| |||||  || || |||||||||| |||  ||||||||| ||| ||||||||||||||    
T  655060 gtccaatctcttcttgtatcaaattaatttggacacatattttagatcctcaaatctgaacatcttctcaaagttgagaaggagctaaaattttcaaagg 654961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 840795 - 840696
Alignment:
Q  6 gtccaatctcttcttatatcaaattcattttgatccatatttcagatcaccagatttgaacatcttttcacggttgagaagcagccaaaattttcaaagg 105  Q
    ||||||||||||||| ||||||||| |||| ||  ||||||| |||||  || || |||||||||| |||  ||||||||| ||| ||||||||||||||    
T  840795 gtccaatctcttcttgtatcaaattaatttggacacatattttagatcctcaaatctgaacatcttctcaaagttgagaaggagctaaaattttcaaagg 840696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 15963018 - 15962879
Alignment:
Q  7 tccaatctcttcttatatcaaattcattttgatccatatttcagatcaccagatttgaacatcttttcacggtt-gagaagcagccaaaattttcaaagg 105  Q
    |||||||||||||| |||||||||||||| ||| |||||||||||||  |  || |||| ||||| |||  ||| |||||||||||||| |||| |||||    
T  15963018 tccaatctcttcttgtatcaaattcattt-gatacatatttcagatcctctcatctgaatatcttctcaaagtttgagaagcagccaaattttttaaagg 15962920  T
Q  106 gtgacaatccaaaaacgcttccttgtgaccattattcttac 146  Q
    || ||||| ||||  |  |||||||||||||||||| ||||    
T  15962919 gtcacaattcaaactcatttccttgtgaccattatttttac 15962879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 24226712 - 24226792
Alignment:
Q  27 aattcattttgatccatatttcagatcaccagatttgaacatcttttcacggttgagaagcagccaaaattttcaaagggt 107  Q
    |||| |||||||| |||| || |||||| || |||||||||| || ||| ||| |||||||||||||||||||||||||||    
T  24226712 aatttattttgatacatactttagatcatcatatttgaacatattctcaaggtggagaagcagccaaaattttcaaagggt 24226792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 20662164 - 20662075
Alignment:
Q  29 ttcattttgatccatatttcagatcaccagatttgaacatcttttcacggttgagaagcagccaaaattttcaaagggtgacaatccaaa 118  Q
    ||||||||||| ||||||| |||| | || || ||||||| ||||||  ||||||||||||  |||||||||||||| | ||||| ||||    
T  20662164 ttcattttgatacatattttagataatcaaatctgaacatattttcaaagttgagaagcagttaaaattttcaaaggatcacaattcaaa 20662075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 37488954 - 37489046
Alignment:
Q  7 tccaatctcttcttatatcaaattcattttgatccatatttcagatcaccaga-tttgaacatcttttcacggttgagaagcagccaaaattt 98  Q
    ||||||||| ||  ||||||||||||||||||| ||||||||| || | || | |||||| ||||| |||  ||||||||| |||| ||||||    
T  37488954 tccaatctcgtcaaatatcaaattcattttgatacatatttcatattagcaaattttgaagatcttctcaaagttgagaagtagcccaaattt 37489046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 25230048 - 25230113
Alignment:
Q  7 tccaatctcttcttatatc-aaattcattttgatccatatttcagatcaccagatttgaacatctt 71  Q
    |||||||| ||||| |||| |||||||||||||| ||||| |||||||| ||||| ||||||||||    
T  25230048 tccaatcttttcttgtatcgaaattcattttgatacatatatcagatcatcagatatgaacatctt 25230113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 20186033 - 20186112
Alignment:
Q  29 ttcattttgatccatatttcagatcaccagatttgaacatcttttcacggttgagaagcagc---caaaattttcaaagg 105  Q
    ||||||||||| ||||||| |||| | || || |||||||||||||| |||| |||||||||   |||||||||||||||    
T  20186033 ttcattttgatacatattttagataatcaaatctgaacatcttttcaaggtttagaagcagcagtcaaaattttcaaagg 20186112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 17622277 - 17622318
Alignment:
Q  8 ccaatctcttcttatatcaaattcattttgatccatatttca 49  Q
    ||||||||||||| |||||||||||||||||| |||| ||||    
T  17622277 ccaatctcttcttttatcaaattcattttgatacatacttca 17622318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 33699654 - 33699582
Alignment:
Q  8 ccaatctcttcttatatcaaattcattttgatccatatttcagatcaccagatttgaacatcttttcacggtt 80  Q
    ||||||||||||| ||||||||| |||||||| || | ||||||||| || || |||||||||| ||| ||||    
T  33699654 ccaatctcttcttgtatcaaatttattttgatacaaacttcagatcatcatatctgaacatcttctcaaggtt 33699582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University