View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7984_high_14 (Length: 253)
Name: NF7984_high_14
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7984_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 42 - 245
Target Start/End: Original strand, 38645105 - 38645307
Alignment:
| Q |
42 |
cctttttggtgaatgctatggtgaggcaggggtcatgtagttcacatgtgaggaacaaaatataaccgcaagatatgatcaattgttagcatctgatgaa |
141 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| |
|
|
| T |
38645105 |
cctttttggtgaatgctatggtgagacaggggtcatgtacttcacatgtgaggaacaaaatataaccgcaagatatgatcgatggttagcatatgatgaa |
38645204 |
T |
|
| Q |
142 |
attaatagtgagaacacataatcttttcaatcacaatatatccaaaattgattttcaaattaaaataattttgttttatctctttctttcttcttctcac |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
38645205 |
attaatagtgagaacacataatcttttcaatcacaatatatccaaaattgattttcaaattaaaataa-tttgttttatctctttctttcttcttttcat |
38645303 |
T |
|
| Q |
242 |
tcga |
245 |
Q |
| |
|
|||| |
|
|
| T |
38645304 |
tcga |
38645307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 45 - 236
Target Start/End: Original strand, 13610151 - 13610344
Alignment:
| Q |
45 |
ttttggtgaatgctatggtgaggcaggggtcatgtagttcacatgtgaggaacaaaatataaccgcaagatatgatcaattgttagcatctgatgaaatt |
144 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13610151 |
ttttggtgaatgctatggtgaggtaggggtcatgtagttcacatgtgag-aacaaaatataaccgcaagatatgatcaattgttagcttctgatgaaatt |
13610249 |
T |
|
| Q |
145 |
aatagtgagaacacata----atcttttcaatcacaatatatccaaaattgattttcaaattaaaataattttgttttatctctttctttcttctt |
236 |
Q |
| |
|
||||||||||||||||| ||||||||| | |||| ||| ||||||||||||||||||||||||| ||| |||| ||||||||||| ||||| |
|
|
| T |
13610250 |
aatagtgagaacacatatattttcttttcaaactcaattaatcaaaaattgattttcaaattaaaataa-tttattttctctctttcttttttctt |
13610344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 49 - 241
Target Start/End: Original strand, 33641636 - 33641830
Alignment:
| Q |
49 |
ggtgaatgctatggtgaggcaggggtcatgtagttcacatgtgaggaacaaaatataaccgcaagatatgatcaattgttagcatctgatgaaattaata |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33641636 |
ggtgaatgctatggtgaggcaggggtcatgtacttcacatgtgag-aacaaaatataaccgcaagatatgatcaattgttagcttctgatgaaattaata |
33641734 |
T |
|
| Q |
149 |
gtgagaacacata----atcttttcaatcacaatatatccaaaattgattttcaaattaaaataattttgttttatctctttctttcttcttctcac |
241 |
Q |
| |
|
||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||| |||| |
|
|
| T |
33641735 |
gtgagaacacatatattttcttttcaaacacaattaatcaaaaattgattttcaaattaaaataa-tttattttctctctttattttttcttttcac |
33641830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 45 - 241
Target Start/End: Original strand, 54131297 - 54131495
Alignment:
| Q |
45 |
ttttggtgaatgctatggtgaggcaggggtcatgtagttcacatgtgaggaacaaaatataaccgcaagatatgatcaattgttagcatctgatgaaatt |
144 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
54131297 |
ttttggtgaatgctatggtgaggtaggggtcatgtaattcacatgtgag-aacaaaatataaccgcaagatatgatcaattgttagcttctgatgaaatt |
54131395 |
T |
|
| Q |
145 |
aatagtgagaacac----ataatcttttcaatcacaatatatccaaaattgattttcaaattaaaataattttgttttatctctttctttcttcttctca |
240 |
Q |
| |
|
|||||||||||||| || ||||||||| | |||| ||| ||||||||||||||||||||||||| ||| |||| ||||||||||| ||||| ||| |
|
|
| T |
54131396 |
aatagtgagaacacgtatattttcttttcaaactcaattaatcaaaaattgattttcaaattaaaataa-tttattttctctctttcttttttcttttca |
54131494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 23508471 - 23508368
Alignment:
| Q |
43 |
ctttttggtgaatgctatggtgaggcaggggtcatgtagttcacatgtgaggaacaaaatataaccgcaagatatgatcaattgttagcatctgatgaaa |
142 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | ||| ||||| ||||| |||||||||||||||| ||||||||||||| || | |||||| |||| |
|
|
| T |
23508471 |
ctttttggtgaatgctatggtgaggtaggggtaaagtacttcacttgtgatgaacaaaatataaccgtgagatatgatcaatggtcatgatctgaggaaa |
23508372 |
T |
|
| Q |
143 |
ttaa |
146 |
Q |
| |
|
|||| |
|
|
| T |
23508371 |
ttaa |
23508368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University