View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7984_high_17 (Length: 201)
Name: NF7984_high_17
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7984_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 45383334 - 45383498
Alignment:
| Q |
18 |
atttccacccttgctttcctagcattgccaaattgaaagccgtcaaatctttgaagcccatcccgccaaattttttatgaacaatgagtttatcccaaga |
117 |
Q |
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| T |
45383334 |
atttccacccttgctttcctagcattgccaaattgaaagccgtcaaatctttgaagcccatcccgccaaattttttatgaacaatgagtttatcccaaga |
45383433 |
T |
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| Q |
118 |
tagccaatgaatacctctattattgtttccaccatttccccaccaaaaggcatttatcatttttt |
182 |
Q |
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| T |
45383434 |
tagccaatgaatacctctattattgtttccaccatttccccaccaaaaggcatttatcatttttt |
45383498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 898206 - 898370
Alignment:
| Q |
20 |
ttccacccttgctttcctagcattgccaaattgaaagccgtcaaatctttgaagcccatcccgccaaattttttatgaacaatgagtttatcccaagata |
119 |
Q |
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| T |
898206 |
ttccacccttgtttacccaacattgctaagttgaaggccgttaaatctttaaaactcaccccaccatatttcttgtgcatagtaagcttctcccaggaaa |
898305 |
T |
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| Q |
120 |
gccaatgaatacctctattattgtttccaccatttccccaccaaaaggcatttatcattttttca |
184 |
Q |
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| T |
898306 |
gccagtgaatacctctattattgcttcctccattcccccaccaaaatgaatttagcattttttca |
898370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 34672311 - 34672148
Alignment:
| Q |
20 |
ttccacccttgctttcctagcattgccaaattgaaagccgtcaaatctttgaagcccatcccgccaaattttttatgaacaatgagtttatcccaagata |
119 |
Q |
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| T |
34672311 |
ttccaaccctgcttacctaacattgccagattaaacgccgtcaaatccttgaaccccatacctccatgatttttatgaactctaagcttattacaagata |
34672212 |
T |
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| Q |
120 |
gccaatgaatacctctattattgtttccaccatttccccaccaaaaggcatttatcattttttc |
183 |
Q |
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| T |
34672211 |
gccaatgaattcctcttctgttactccctccattcccccaccaaaagccatttatcattttttc |
34672148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 184
Target Start/End: Original strand, 27041245 - 27041389
Alignment:
| Q |
40 |
cattgccaaattgaaagccgtcaaatctttgaagcccatcccgccaaattttttatgaacaatgagtttatcccaagatagccaatgaatacctctatta |
139 |
Q |
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| T |
27041245 |
cattgctaagttgaaagccgttaaatctttaaagctcattccaccatattgcttgtgcagagtaagcttctcccaagaaagccaatgaatacctctatta |
27041344 |
T |
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| Q |
140 |
ttgtttccaccatttccccaccaaaaggcatttatcattttttca |
184 |
Q |
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| T |
27041345 |
ttacttcctccatgctcccaccaaaaagcatttagcattttttca |
27041389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 10514839 - 10514780
Alignment:
| Q |
19 |
tttccacccttgctttcctagcattgccaaattgaaagccgtcaaatctttgaagcccat |
78 |
Q |
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| T |
10514839 |
tttccacccttgttttccaagcattgccacattaaatgctgtcaaatctttgaaacccat |
10514780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 42435546 - 42435512
Alignment:
| Q |
150 |
catttccccaccaaaaggcatttatcattttttca |
184 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
42435546 |
cattaccccaccaaaaggcatttatcattttttca |
42435512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 6751832 - 6751872
Alignment:
| Q |
143 |
tttccaccatttccccaccaaaaggcatttatcattttttc |
183 |
Q |
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||||||||||||||||||||||| | ||| ||||||||||| |
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| T |
6751832 |
tttccaccatttccccaccaaaaagaattcatcattttttc |
6751872 |
T |
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