View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7984_high_2 (Length: 649)
Name: NF7984_high_2
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7984_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 257 - 634
Target Start/End: Original strand, 41462138 - 41462517
Alignment:
| Q |
257 |
cttactatttaaagtgtttaaagagtgctcgaaaacactcgttaacttttctcttattattaagcatatctggccatgtgatctgctgagctggttatca |
356 |
Q |
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| T |
41462138 |
cttactatttaaaatgcttaaagagtgctcgaaggcactcgttaacatttggcttattattaagcatatctggccatgtgatctgctgagctggttatca |
41462237 |
T |
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| Q |
357 |
tgtgattaacggttataagaatcgtttattacttggatgtgatat--atcgttaatcgatgattagttagtgcctattagctcaatcacacgtgcattgc |
454 |
Q |
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| T |
41462238 |
tgtgattaacggttataagaatcgtttattacttggatgtgatatatatcgttaatcgatgattagttagtgcctattagctcaatcacacgtgtattgc |
41462337 |
T |
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| Q |
455 |
tgctggtaaggattattatatgagatttacaaataacaatttttaaaatcattgcttcaagggacatacatgcccacgcttaattaatcttaaaaaccga |
554 |
Q |
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| T |
41462338 |
tgctggtaaggattattatatgagatttacaaatgacaatttttaaaatcattgcttcaagggacatacatgcccacgcttaattaatcttaaaaaccga |
41462437 |
T |
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| Q |
555 |
aacttagtttggaatgaagggtataataggaaatagatagaacgattgaatagattcgggagatgatgcttggttgaaag |
634 |
Q |
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| T |
41462438 |
aacttagtttggaatgaagggtataataggaaatagatagaacgattgaatagattcgggagatgatgcttggttgaaag |
41462517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 41461904 - 41461953
Alignment:
| Q |
20 |
aggaatatattatttagtaacacccacttggcttttgaattagaaatttt |
69 |
Q |
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| T |
41461904 |
aggaatatattatatagtaacacccacttggcttttgaattagaaatttt |
41461953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 51835004 - 51835054
Alignment:
| Q |
258 |
ttactatttaaagtgtttaaagagtg-ctcgaaaacactcgttaacttttc |
307 |
Q |
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| T |
51835004 |
ttactatttaaagtgtttaaagagtgtctcgggaacactcgttaacatttc |
51835054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 27778843 - 27778887
Alignment:
| Q |
258 |
ttactatttaaagtgtttaaagagtgctcgaaaacactcgttaac |
302 |
Q |
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| T |
27778843 |
ttaccatttaaagtgcttaaagagtgctcggaaacacacgttaac |
27778887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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