View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7984_high_4 (Length: 491)
Name: NF7984_high_4
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7984_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 6155244 - 6155049
Alignment:
| Q |
18 |
atgtgatagattgatgatatgattgaaaagagagataaatatgaggtgttgaacgagtattcaggaatatgagatgtacaaatagggtgcagatcctctc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
6155244 |
atgtgatagattgatgatatgattgaaaagagagataaatatgaggtgttgaaggagtattgaggaatatgagatgtacaaacggggtgcagatcctctc |
6155145 |
T |
|
| Q |
118 |
catttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaaaatggacggttctgattcattcaatgaatta |
213 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6155144 |
catttgtagagaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaaaatggacggttctgattcattcaatgaatta |
6155049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 298 - 476
Target Start/End: Complemental strand, 6154964 - 6154786
Alignment:
| Q |
298 |
cttccttctctctcgtttggatttcagcagacccaggaaaaattaagaacccatttcactgtaattaagaaaaccacgatcgttgccgaccaaacccagt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
6154964 |
cttccttctctctcgtttggatttcagcagacccaggaaaaattaagaacccatttcactgtaattaagaaaaccatgatcgttgccgacaaaacccagt |
6154865 |
T |
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| Q |
398 |
cacttcgtcgaccgccgccgttgtcgtattgtcaaacatgaggttgccatcactgttccttgtgttactgttgtttcat |
476 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6154864 |
cactccgtcgaccgccgccgttgtcgtattgtcaaacatgaggttgccatcactgttccttgtgttactgttgtttcat |
6154786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 6153594 - 6153665
Alignment:
| Q |
102 |
gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtgga |
174 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
6153594 |
gggtgcagatcctctccatttgtagagaaaatggccaat-tcaatttccactcataaaaacatgacacgtgga |
6153665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 1356271 - 1356348
Alignment:
| Q |
104 |
gtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaa |
182 |
Q |
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||||||||||||||||||||| | |||| | |||||||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
1356271 |
gtgcagatcctctccatttgtggtagaaattg-caatctcaatttcctttcataaaaacaagacacgtggataagtaaa |
1356348 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 35202430 - 35202351
Alignment:
| Q |
102 |
gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaa |
182 |
Q |
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| T |
35202430 |
gggtgcagatcctctccatttggtgaggaaatggcc-atctcaatttcctttcataaaaacaagacacatcgataagtaaa |
35202351 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 298 - 473
Target Start/End: Original strand, 34044207 - 34044382
Alignment:
| Q |
298 |
cttccttctctctcgtttggatttcagcagacccaggaaaaattaagaacccatttcactgtaattaagaaaaccacgatcgttgccgaccaaacccagt |
397 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34044207 |
cttccttctctctcgtttggatttcagcagacccgggaaaaattaagaacctatttcactgtaattaagaaaaccacgatcgttgccgaccaaacccagt |
34044306 |
T |
|
| Q |
398 |
cacttcgtcgaccgccgccgttgtcgtattgtcaaacatgaggttgccatcactgttccttgtgttactgttgttt |
473 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
34044307 |
cactccgtcgaccgccgccgttgtcgtatggtcaaacatgaggttgtcatcactgttccttgtgttattgttgttt |
34044382 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 34044010 - 34044121
Alignment:
| Q |
102 |
gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaaaatggacggttctgattca |
201 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34044010 |
gggtgcagatcctctccatttgtagagaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaaaatggacggttcttattca |
34044109 |
T |
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| Q |
202 |
ttcaatgaatta |
213 |
Q |
| |
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|||||||||||| |
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| T |
34044110 |
ttcaatgaatta |
34044121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 34044996 - 34044924
Alignment:
| Q |
102 |
gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtgga |
174 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34044996 |
gggtgcaaatcctctccatttgtagagaaaatggccaatctcaatttccactcataaaaacatgacacgtgga |
34044924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 34044148 - 34044181
Alignment:
| Q |
240 |
gataaacaaaacattgaaaaccacaccacttctg |
273 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
34044148 |
gataaacaaaacattgaaaaccacaccgcttctg |
34044181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 38934715 - 38934602
Alignment:
| Q |
101 |
agggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaa-aatggacggttctgatt |
199 |
Q |
| |
|
|||||||| ||||||||||||| | ||||||||| ||||||||||||||||| |||||| | |||||||| | || ||| ||| ||||||||||| |
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| T |
38934715 |
agggtgcaaatcctctccattttgtgagaaaatggcaaatctcaatttccactcctaaaaataagacatgtgtaaaataaaacaatcaacggttctgata |
38934616 |
T |
|
| Q |
200 |
cattcaatgaatta |
213 |
Q |
| |
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||||||| |||||| |
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| T |
38934615 |
cattcaaagaatta |
38934602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 20284146 - 20284068
Alignment:
| Q |
102 |
gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaa |
181 |
Q |
| |
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||||||||||||||| ||||||| | |||||||| |||||||||||||| || ||| |||| |||| |||||||||||| |
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| T |
20284146 |
gggtgcagatcctctacatttgtggaaaaaatggc-aatctcaatttccattcttaagaacaagacacgtggataagtaa |
20284068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 33520948 - 33520848
Alignment:
| Q |
102 |
gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaaaatggacggttctgattca |
201 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||| ||| |||||||| | ||||||||| |||| |||||||||| |||| | |||||||||||| |
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| T |
33520948 |
gggtgcagatcctctccatttggtgaggaaatggcc-atcacaatttcctttaataaaaacaggacacgtggataagttgaaatcaatggttctgattca |
33520850 |
T |
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| Q |
202 |
tt |
203 |
Q |
| |
|
|| |
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|
| T |
33520849 |
tt |
33520848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 4523176 - 4523247
Alignment:
| Q |
102 |
gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtgga |
174 |
Q |
| |
|
||||||||||||||||||||| | | ||||| | |||||||||||||| ||||||||||| |||||||||| |
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| T |
4523176 |
gggtgcagatcctctccattttatgaggaaatgac-aatctcaatttccaatcataaaaacaagacatgtgga |
4523247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 4275075 - 4275141
Alignment:
| Q |
107 |
cagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtgga |
174 |
Q |
| |
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|||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||| ||||| |
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| T |
4275075 |
cagatcctctccatttaggtagaaaatggc-aatctcaatttccattcataaaaacatgacacgtgga |
4275141 |
T |
|
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