View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7984_low_1 (Length: 730)
Name: NF7984_low_1
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7984_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 362 - 714
Target Start/End: Original strand, 55076127 - 55076482
Alignment:
| Q |
362 |
ttctccaatggagcacactgatctttccaccaataatggaggtaacataatttcatcccttcaagttgaggaggagga---tgcagatcggaagccctgc |
458 |
Q |
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| T |
55076127 |
ttctccaatggagcacactgatctttccaccaataatggatgtaacagaatttcatcccttcaagttgaggaggaggaggctgcagatcagaagccatgc |
55076226 |
T |
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| Q |
459 |
cctctccgtaagatgattgccgtggcatccattgccgccggcatacaatttgggtgggccctacagctctcccttctcacaccatacattcagcttctag |
558 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55076227 |
cctctccgtaagatgattgttgtggcatccattgccgccggcatacaatttgggtgggccctacagctctcccttctcacaccatacattcagcttctag |
55076326 |
T |
|
| Q |
559 |
gtgtacctcacaagtgggctgccaacatctggctatgtggtcccatatcaggcatgatcgtccagccaatcgttggctactacagtgaccgaagtcattc |
658 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
55076327 |
gtgtacctcacaagtgggctgccaacatctggctatgtggtcccatatcaggcatgatcgtccagccaatcgttggatactacagtgaccgaagtcattc |
55076426 |
T |
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| Q |
659 |
tcgttttggtcgccgccgccctttcatcttctctggttcactagccgtcgccatag |
714 |
Q |
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| T |
55076427 |
tcgttttggtcgccgccgccctttcatcttctctggttcactagccgtcgccatag |
55076482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 169 - 330
Target Start/End: Original strand, 55075953 - 55076125
Alignment:
| Q |
169 |
ttatataatgtctggatcaaaatacgtgtaacacagtcatacatacctaattagcattagaaatgactcttgaaaacgaaattggataaacattgtgatc |
268 |
Q |
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| T |
55075953 |
ttatataatgtctggatcaaaatacgtgtaacacagtcatacatacctaattagcattagaaatcactcttgaaaacgaaattggataaacattgagatc |
55076052 |
T |
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| Q |
269 |
-----------cacacataccagccataactcccgcgttataaattcaccaaaaactcattcttgcacataaa |
330 |
Q |
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| T |
55076053 |
catataagatacatacatcccagccataattcccgcgttataaattcaccaaaaactcactcttgcacataaa |
55076125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 483 - 685
Target Start/End: Complemental strand, 15125802 - 15125600
Alignment:
| Q |
483 |
gcatccattgccgccggcatacaatttgggtgggccctacagctctcccttctcacaccatacattcagcttctaggtgtacctcacaagtgggctgcca |
582 |
Q |
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|||||||| || ||||| || ||||| ||||||||||||||||| || | || |||||||| | ||| | || ||||| || || |||||||||||| |
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| T |
15125802 |
gcatccatcgcggccggtattcaattcgggtgggccctacagctttcattgctaacaccatatgtccagttgcttggtgtcccacatcagtgggctgcca |
15125703 |
T |
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| Q |
583 |
acatctggctatgtggtcccatatcaggcatgatcgtccagccaatcgttggctactacagtgaccgaagtcattctcgttttggtcgccgccgcccttt |
682 |
Q |
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||||||||||||||||||| || ||||| |||||| | || ||| | || |||||||||||||||||||| ||||| ||||| || || || |||||||| |
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| T |
15125702 |
acatctggctatgtggtccaatttcaggtatgatcatacaaccacttgtaggctactacagtgaccgaagccattcacgtttcggacgtcgtcgcccttt |
15125603 |
T |
|
| Q |
683 |
cat |
685 |
Q |
| |
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||| |
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| T |
15125602 |
cat |
15125600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 479 - 533
Target Start/End: Original strand, 10931826 - 10931880
Alignment:
| Q |
479 |
cgtggcatccattgccgccggcatacaatttgggtgggccctacagctctccctt |
533 |
Q |
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|||||| ||||| ||||||||||| ||||| || ||||||||||||||||||||| |
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| T |
10931826 |
cgtggcgtccatcgccgccggcattcaattcggatgggccctacagctctccctt |
10931880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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