View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7984_low_10 (Length: 410)
Name: NF7984_low_10
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7984_low_10 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: scaffold0049 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 60499 - 60097
Alignment:
| Q |
1 |
aaggaccttgaatgaaaccatccctccatagttgatcaaaacacattaccaaacaaacatctatacgtcagtatctccaatcagattctgtacagtnnnn |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
60499 |
aaggaccttgagtgaaaccatccctccatagttgatcaaaacacattaccaaacaaacatctatacgtcagtgtctccaatcagattctgtacagtaaaa |
60400 |
T |
|
| Q |
101 |
nnnnnctagcataattttgaatgtaacacatacatagacaatacaagacattatatgttatcttggtcctgaaagttccattgcttgtgcaagcaaagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60399 |
aaaaactagcataattttgaatgtaacacatacatagacaatacaagacattatatgttatcttggtcctgaaagttccattgcttgtgcaagcaaagaa |
60300 |
T |
|
| Q |
201 |
gagtcatcagtaagatcagaataacgttctgaagacgagagttcatttcctctacttcgtgttgattcagctctttgtgacgcttcccatttctctgcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60299 |
gagtcatcagtaagatcagaataacgttctgaagacgagagttcatttcctctacttcgtgttgattcagctctttgtgacgcttcccatttctctgcaa |
60200 |
T |
|
| Q |
301 |
gtccatctccttcaagcattctaactacttctgacatttttggcctgtgacttggaaggtactgagtacataaaagagccacttgaactatttcatctca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
60199 |
gtccatctccttcaagcattctaactacttctgacatttttggcctgtgacttggaaggtactgagtacataaaagagccacttgaactatttcatctaa |
60100 |
T |
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| Q |
401 |
ctc |
403 |
Q |
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||| |
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| T |
60099 |
ctc |
60097 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 394
Target Start/End: Original strand, 5853447 - 5853559
Alignment:
| Q |
282 |
gcttcccatttctctgcaagtccatctccttcaagcattctaactacttctgacatttttggcctgtgacttggaaggtactgagtacataaaagagcca |
381 |
Q |
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||||||||| | || || |||||||| ||||| ||||| | || || || |||||||| || || || |||||||| || ||||||||||| ||||||| |
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| T |
5853447 |
gcttcccatctttcggctagtccatcaccttcgagcatgcgtacaacctcggacattttaggtctatggcttggaagatattgagtacataagagagcca |
5853546 |
T |
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| Q |
382 |
cttgaactatttc |
394 |
Q |
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||||||| ||||| |
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| T |
5853547 |
cttgaaccatttc |
5853559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 54225330 - 54225394
Alignment:
| Q |
286 |
cccatttctctgcaagtccatctccttcaagcattctaactacttctgacatttttggcctgtga |
350 |
Q |
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|||| ||||| ||||||||||||||||||||||| | || ||||| |||||||| |||| |||| |
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| T |
54225330 |
cccacttctcagcaagtccatctccttcaagcatccggaccacttcggacattttcggccggtga |
54225394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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