View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7984_low_11 (Length: 407)
Name: NF7984_low_11
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7984_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 42467901 - 42467532
Alignment:
| Q |
19 |
ccaaaacttacggtgtttaatataaaattaattcagtgaccgtgcattacacaatcattcaattagcattgttttcgcaatgtcacttaattaccaaaat |
118 |
Q |
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| T |
42467901 |
ccaaaacttacggtgtttaatataaaattaattcagtgactgtgcattacacaatcattcaattagcattgttttcacaatgtcacttaattaccaaaat |
42467802 |
T |
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| Q |
119 |
gacattttattttatcactaagaattgaactgggttctctaaggttacaaatcatacacattgcgcatcaaccacttacgttagaactagtggcatcagg |
218 |
Q |
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| T |
42467801 |
gacattttatttcatcattaagaattgaactaggttctctaaagttacaaatcatacacattgcgcatcaaccacttacgttagaactagtggcatctgg |
42467702 |
T |
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| Q |
219 |
cttgcatgtgacaaatcaaattgtatttagcagaaataaggaattaatcctaattatgacgagtagcaaaagttatgcttatctnnnnnnntcttcactg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
42467701 |
cttgcatgtgacaaatcaaattgtatttagcagaaatgaggaattaatcctaattatgacgagtagcaaaagttatgcttatctaaaaaaatcttcattg |
42467602 |
T |
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| Q |
319 |
ttcatctatggttattgaataatgaataaacnnnnnnnttgaaatatggggctagacctggaaaaaacca |
388 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42467601 |
ttcatctatggttattgaataatgaataaacaaaaaaattgaaatatggggctagacctggaaaaaacca |
42467532 |
T |
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