View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7984_low_12 (Length: 398)

Name: NF7984_low_12
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7984_low_12
NF7984_low_12
[»] chr3 (8 HSPs)
chr3 (68-382)||(48553940-48554254)
chr3 (16-70)||(48553857-48553911)
chr3 (16-70)||(44196275-44196329)
chr3 (71-154)||(50806618-50806701)
chr3 (71-154)||(50869176-50869259)
chr3 (16-70)||(50806532-50806586)
chr3 (16-70)||(50869291-50869345)
chr3 (95-154)||(44196176-44196235)
[»] chr6 (2 HSPs)
chr6 (100-147)||(2732315-2732360)
chr6 (85-121)||(4003710-4003746)
[»] chr1 (1 HSPs)
chr1 (77-121)||(870961-871005)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 68 - 382
Target Start/End: Original strand, 48553940 - 48554254
Alignment:
Q  68 attaacaacttaagcgcttatgctataagcgcttatgtataagctatttttatataaaataaagtcagattgttttcataaaagttgagttatttacaca 167  Q
    ||||||||||||||| |||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48553940 attaacaacttaagcacttatagcataagcgtttatgtataagctatttttatataaaataaagtcagattgttttcataaaagttgagttatttacaca 48554039  T
Q  168 agctatcctgcctagtctatagagatgtcataaactgttttcgtaagctcttttaactgtctcacaaagtgtttacgccagtagatcaaatatgctcaaa 267  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48554040 agctatcctgcctagtctatagagatgccataaactgttttcgtaagctcttttaacagtctcacaaagtgtttacgccagtagatcaaatatgctcaaa 48554139  T
Q  268 taagtcaattcgaataggttcttaattaccttttttaactaactttattagcaaatggctatgctgctcctaggaaacagaatttaattggcatatttta 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48554140 taagtcaattcgaataggttcttaattaccttttttaactaactttattagcaaatggctatgctgctcctaggaaacagaatttaattggcatatttta 48554239  T
Q  368 acaaactttactttt 382  Q
    |||||||||||||||    
T  48554240 acaaactttactttt 48554254  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 48553857 - 48553911
Alignment:
Q  16 atgcataatgggaacaaaaggctatgctgctcctgagtatatcatgtcaggtatt 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48553857 atgcataatgggaacaaaaggctatgctgctcctgagtatatcatgtcaggtatt 48553911  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 44196329 - 44196275
Alignment:
Q  16 atgcataatgggaacaaaaggctatgctgctcctgagtatatcatgtcaggtatt 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44196329 atgcataatgggaacaaaaggctatgctgctcctgagtatatcatggcaggtatt 44196275  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 50806618 - 50806701
Alignment:
Q  71 aacaacttaagcgcttatgctataagcgcttatgtataagctatttttatataaaataaagtcagattgttttcataaaagttg 154  Q
    |||||||||||| |||||   |||||| |||||||||||||| ||||||||||||||||||||| || ||||||||| ||||||    
T  50806618 aacaacttaagcacttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttg 50806701  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 50869259 - 50869176
Alignment:
Q  71 aacaacttaagcgcttatgctataagcgcttatgtataagctatttttatataaaataaagtcagattgttttcataaaagttg 154  Q
    |||||||||||| |||||   |||||| |||||||||||||| ||||||||||||||||||||| || ||||||||| ||||||    
T  50869259 aacaacttaagcacttatagcataagcacttatgtataagctgtttttatataaaataaagtcaaatagttttcatataagttg 50869176  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 50806532 - 50806586
Alignment:
Q  16 atgcataatgggaacaaaaggctatgctgctcctgagtatatcatgtcaggtatt 70  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  50806532 atgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtatt 50806586  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 50869345 - 50869291
Alignment:
Q  16 atgcataatgggaacaaaaggctatgctgctcctgagtatatcatgtcaggtatt 70  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  50869345 atgcatgatgggaacaaatggctatgctgctcctgagtatatcatggcaggtatt 50869291  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 44196235 - 44196176
Alignment:
Q  95 agcgcttatgtataagctatttttatataaaataaagtcagattgttttcataaaagttg 154  Q
    |||||||||||||||||| ||||||| ||||||||||||| || ||||||||| ||||||    
T  44196235 agcgcttatgtataagctgtttttatttaaaataaagtcaaatagttttcatataagttg 44196176  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 2732360 - 2732315
Alignment:
Q  100 ttatgtataagctatttttatataaaataaagtcagattgttttcata 147  Q
    ||||||||||||||||||  ||||||||||||||| ||| ||||||||    
T  2732360 ttatgtataagctatttt--tataaaataaagtcaaattattttcata 2732315  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 4003746 - 4003710
Alignment:
Q  85 ttatgctataagcgcttatgtataagctatttttata 121  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  4003746 ttatgctataagtgcttatgtataagctatttctata 4003710  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 870961 - 871005
Alignment:
Q  77 ttaagcgcttatgctataagcgcttatgtataagctatttttata 121  Q
    ||||||||||||  |||||| |||||||||||| |||||||||||    
T  870961 ttaagcgcttatcatataagtgcttatgtataaactatttttata 871005  T

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