View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7984_low_14 (Length: 340)
Name: NF7984_low_14
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7984_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 47386546 - 47386210
Alignment:
| Q |
1 |
aaccttgtacctttatctatatttttgtaagattcttaggtaaggcattcaaaacgtgcggtttgcattctactcaaactcgc----ttagtgtttcact |
96 |
Q |
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| T |
47386546 |
aaccttgtacctttatctatatttttgtaagattcttaggtaaggcattcaaaacgtgcggtttgcattctactcaaactcaccgagtgagtgtttcact |
47386447 |
T |
|
| Q |
97 |
attctgctgctacatctgtatcgtatcactgcgctgctcgtgtgtccttcttggaacaaa-----gtaacgataataactaccgacaagactatagttta |
191 |
Q |
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| T |
47386446 |
attctgctgctacatctgtatcgtatcactgcgctgctcgtgtgtccttcttggaacaaattaaagtaacgataataactaccgacaagactatagttta |
47386347 |
T |
|
| Q |
192 |
tgagacaaacacgggaaattcattaaacaaaacaagatgaatgcacgcaca---------aaaatatttaaatcttgta--ttttattaatacatatata |
280 |
Q |
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| T |
47386346 |
tgatacaaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaaggacaaaaatatttaaatcttgtattttttattaatacatatata |
47386247 |
T |
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| Q |
281 |
aatagaactgaaaatataaatagttttaggaagtagt |
317 |
Q |
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| T |
47386246 |
aatagaactgaaaatataaatagttttaggaagtagt |
47386210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 317
Target Start/End: Original strand, 47372630 - 47372749
Alignment:
| Q |
197 |
caaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaatattta-aatcttgtattttattaatacatatataaatagaactgaaaat |
295 |
Q |
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|||||||||||||||||||||||||| || | ||||||||| | ||| | || | |||||||| ||||||||||||| ||| |||||| |||||| |
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| T |
47372630 |
caaacacgggaaattcattaaacaaagcaggttgaatgcacaaaaaaacaaatacataatcttgttttttattaatacagata--aatagatgggaaaat |
47372727 |
T |
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| Q |
296 |
ataaatagttttaggaagtagt |
317 |
Q |
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|||||||||||||||||||||| |
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| T |
47372728 |
ataaatagttttaggaagtagt |
47372749 |
T |
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