View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7984_low_15 (Length: 333)
Name: NF7984_low_15
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7984_low_15 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 47449825 - 47450132
Alignment:
| Q |
17 |
caatattaaactagttctgattatataatccaaacattatgggatgagttttgattatataattcgaacatttgagggatgagttctgattcgaatcaat |
116 |
Q |
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| T |
47449825 |
caatattgaactagttctgattatataatccaaacattatgggatcagttttgattatataatccgaacatttgcaggatgagttctgattcgaatcaat |
47449924 |
T |
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| Q |
117 |
aaagagtgtggatggttactttctcaacaagactaactcattgcacacgtttttctttgatcagaccagtttcattagttggtcagacctgttttaccat |
216 |
Q |
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| T |
47449925 |
aaagagtgtggatggttactttctcaacaagactaactcattgcacacatttttctttgatcagactagtttcattaattggtcagacctgttttaccat |
47450024 |
T |
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| Q |
217 |
annnnnnngatcgtaattaatggttctctacactctgcactattcttcacaaatttctcctataaatacttatcaatcaatcattcacaaattttcattt |
316 |
Q |
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| T |
47450025 |
gtttttttgaccgtaattaatggtcttctacactctgcactattcttaacaaatttctcctataaatacttatcaatcaatcaatcacaaattttcattc |
47450124 |
T |
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| Q |
317 |
catctcac |
324 |
Q |
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| T |
47450125 |
catctcac |
47450132 |
T |
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Target: scaffold0150 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 11072 - 11123
Alignment:
| Q |
119 |
agagtgtggatggttactttctcaacaagactaactcattgcacacgttttt |
170 |
Q |
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| T |
11072 |
agagtgtggaaggtgacttgctcaacaagactaactcattgaacacattttt |
11123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 4144030 - 4143980
Alignment:
| Q |
125 |
tggatggttactttctcaacaagactaactcattgcacacgtttttctttg |
175 |
Q |
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| T |
4144030 |
tggatgattacttgcttagcaagactaactcattgaacacgtttttctttg |
4143980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 4159842 - 4159792
Alignment:
| Q |
125 |
tggatggttactttctcaacaagactaactcattgcacacgtttttctttg |
175 |
Q |
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| T |
4159842 |
tggatgattacttgcttagcaagactaactcattgaacacgtttttctttg |
4159792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 6328144 - 6328091
Alignment:
| Q |
139 |
ctcaacaagactaactcattgcacacgtttttctttgatcagaccagtttcatt |
192 |
Q |
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| T |
6328144 |
ctcagcaagactaactcattgaacaagtttttctttggtcatatcagtttcatt |
6328091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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