View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7984_low_16 (Length: 327)
Name: NF7984_low_16
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7984_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 4136143 - 4136313
Alignment:
| Q |
18 |
aaaaggaagtgccagactattgagatatattcaagctaggccatgcaacaacactaatactcttacggagagtgtctcgcctatttgtgtccaacaaggc |
117 |
Q |
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| T |
4136143 |
aaaaggaagggccggactattgagatatattcaagctaggccatgcaacaacactaatactcttacggagagtgtctcgcctatttgtgtccaacaaggc |
4136242 |
T |
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| Q |
118 |
tcgatggattagtcaccacaattgtacatggaaaatgccgaattttaccaataagtctatgagaatgtatc |
188 |
Q |
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| T |
4136243 |
tcgatggattagtcaccacaattgtacatggaaaatgccaaattttaccaataagtctatgagaatgtatc |
4136313 |
T |
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Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 4136333 - 4136401
Alignment:
| Q |
215 |
ctaaataacatgattgactaatgacatttaatcctcaaaaaactaaagatatgttcatataagatttaa |
283 |
Q |
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| T |
4136333 |
ctaaataacatgattgactaatggcatttaatcctcaaaaaactaaagatatgtttatataagatttaa |
4136401 |
T |
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