View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7984_low_18 (Length: 252)

Name: NF7984_low_18
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7984_low_18
NF7984_low_18
[»] chr1 (6 HSPs)
chr1 (8-252)||(42202991-42203227)
chr1 (8-252)||(42211859-42212095)
chr1 (97-230)||(42421181-42421306)
chr1 (97-229)||(42217915-42218046)
chr1 (8-76)||(42421338-42421406)
chr1 (8-71)||(42217815-42217878)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 42202991 - 42203227
Alignment:
Q  8 agtagcagagatagataaagaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacga 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42202991 agtagcacagatagataaagaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacga 42203090  T
Q  108 attggtcataataggcaacggagaactagaagagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaa 207  Q
    ||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42203091 attggtcataataggcaacggagaac--------tagaagacagttttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaa 42203182  T
Q  208 atcctgaggttgatacctatgactctatgagagcgagaatagttt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42203183 atcctgaggttgatacctatgactctatgagagcgagaatagttt 42203227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 42211859 - 42212095
Alignment:
Q  8 agtagcagagatagataaagaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacga 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42211859 agtagcacagatagataaagaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacga 42211958  T
Q  108 attggtcataataggcaacggagaactagaagagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaa 207  Q
    ||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42211959 attggtcataataggcaacggagaac--------tagaagacagttttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaa 42212050  T
Q  208 atcctgaggttgatacctatgactctatgagagcgagaatagttt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42212051 atcctgaggttgatacctatgactctatgagagcgagaatagttt 42212095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 97 - 230
Target Start/End: Complemental strand, 42421306 - 42421181
Alignment:
Q  97 gaattacacgaattggtcataataggcaacggagaactagaagagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgt 196  Q
    |||||||| ||||||||||||| | ||||||||||||||| |||        || |||||||||||||||||| ||||||||||||||||||||||||||    
T  42421306 gaattacatgaattggtcataacaagcaacggagaactaggaga--------cagttttgaaaccgtctcatctcttcttaggaaactgaaagactgcgt 42421215  T
Q  197 gctcacagaaaatcctgaggttgatacctatgac 230  Q
    |||| |||||||||||||||||||||||||||||    
T  42421214 gctcgcagaaaatcctgaggttgatacctatgac 42421181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 229
Target Start/End: Original strand, 42217915 - 42218046
Alignment:
Q  97 gaattacacgaattggtcataataggcaacggagaactagaagagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgt 196  Q
    |||||||||||||||||||||| | | ||||||||||||| |||  ||     ||  |||||||| |||||||||||||||||||||||||| ||||| |    
T  42217915 gaattacacgaattggtcataaaaagtaacggagaactaggagac-agttttgaaagttgaaaccatctcatcccttcttaggaaactgaaaaactgcat 42218013  T
Q  197 gctcacagaaaatcctgaggttgatacctatga 229  Q
    |||| ||||||||||| ||||||||||||||||    
T  42218014 gctcgcagaaaatcctaaggttgatacctatga 42218046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 42421406 - 42421338
Alignment:
Q  8 agtagcagagatagataaagaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgag 76  Q
    ||||||| ||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  42421406 agtagcacagaaagataaagaccctgatcctgctatactcaaaagactctctgagaagttgcatctgag 42421338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 42217815 - 42217878
Alignment:
Q  8 agtagcagagatagataaagaccctgatcctgttatactcaaaaggctctctgagaagttgcat 71  Q
    ||||||| ||| |||||||||||||||||||| ||| |||||||| | | ||||||||||||||    
T  42217815 agtagcacagaaagataaagaccctgatcctgctatcctcaaaagacccactgagaagttgcat 42217878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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