View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7984_low_3 (Length: 506)
Name: NF7984_low_3
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7984_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 16 - 488
Target Start/End: Complemental strand, 38226865 - 38226393
Alignment:
| Q |
16 |
atgaactatcaaattcactatagtcgagaagctgaggagattatattccagcacataaacaatggtgaatgggatttactttctgcaagaattcacagag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38226865 |
atgaactatcaaattcactatagtcgagaagctgaggagattatattccagctcataaacaatggtgaatgggatttactttctgcaagaattcacacag |
38226766 |
T |
|
| Q |
116 |
tatcattaaagtggttgtttcaacaagagaatataatcaactcactgtgtcatcagattttgaaattctgcagaaacaataacttagaaggggatgacat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226765 |
tatcattaaagtggttgtttcaacaagagaatataatcaactcactgtgtcatcagattttgaaattctgcagaaacaataacttagaaggggatgacat |
38226666 |
T |
|
| Q |
216 |
gattattggaaacagtaaccaaactgtaaatgtacagacacttgcggagttagtatcctctgaagataactatggagctagacttttcatatgcttattg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226665 |
gattattggaaacagtaaccaaactgtaaatgtacagacacttgcagagttagtatcctctgaagataactatggagctagacttttcatatgcttattg |
38226566 |
T |
|
| Q |
316 |
gcacagctcgccgaggaagaaggccaggaacatgatataatttctgttctgaatctaatggcaactatgattcatatatgcccagctgcttctgaccaac |
415 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226565 |
gcacagctcgctgaggaagaaggccaggaacatgatataatttctgttctgaatctaatggcaactatgattcatatatgcccagctgcttctgaccaac |
38226466 |
T |
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| Q |
416 |
tatctttgcatggaatagggacaacaatcaggacttgttgcttctccacagcaactttcatgtccatcttggt |
488 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226465 |
tatctttgcatggaatagggacaacaatcaggacttgttgcttctccacagcaactttcatgtccatcttggt |
38226393 |
T |
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